Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq10676 338 1e-90 seq387 277 4e-72 seq168 271 2e-70 seq10675 264 2e-68 seq68 214 4e-53 seq6 172 1e-40 seq2 80.6 6e-13 >seq10676 Length=153368 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 105703 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 105644 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105643 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 105584 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 105583 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 105524 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 105523 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 105464 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 105463 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 105404 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 105403 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 105352 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 130836 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 130895 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130896 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 130955 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 130956 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 131015 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 131016 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 131075 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 131076 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 131135 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 131136 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 131187 >seq387 Length=47239 Score = 277 bits (306), Expect = 4e-72 Identities = 236/289 (82%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || || | ||||||||||| || | ||||||||||||| |||||| Sbjct 30547 GCATCTTCACAGGCATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 30488 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 30487 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTT 30428 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 30427 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACTA 30368 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 30367 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 30308 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291 || || ||||||||||||||||| ||||||| |||||| || ||||| Sbjct 30307 GCGGAGACCTGTGTTTTTGGTAAGCAGTCGCCCGGGCCTGGTCACTGCG 30259 >seq168 Length=91649 Score = 271 bits (300), Expect = 2e-70 Identities = 236/290 (81%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || || | ||||||||||| || | ||||||||||||| |||||| Sbjct 61054 GCATCTTCACAGGCATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 61113 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61114 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAAGAATTTCGCTACCTTAGGACCGTTT 61173 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 61174 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACTA 61233 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| |||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 61234 ACTTCCTTGACCTTCTGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 61293 Query 243 GCAGAAACCTGTGTTTTTGGTAAA-CAGTCGCTTGGGCCTATTCTCTGCG 291 || || |||||||||||||||||| ||||||| |||||| || ||||| Sbjct 61294 GCGGAGACCTGTGTTTTTGGTAAAGCAGTCGCCCGGGCCTGGTCACTGCG 61343 >seq10675 Length=258426 Score = 264 bits (292), Expect = 2e-68 Identities = 284/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| | ||| || ||||||| | | Sbjct 139672 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 139731 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 139732 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 139791 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 139792 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 139843 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 139844 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 139903 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 139904 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 139963 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 139964 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 140023 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 140024 CTTCGACATGGTTCTC 140039 >seq68 Length=187690 Score = 214 bits (236), Expect = 4e-53 Identities = 235/306 (77%), Gaps = 14/306 (5%) Strand=Plus/Minus Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 ||||||| ||| || |||||||||||||| ||||||||||||| |||| |||||| || Sbjct 72332 GTGCCCAGATCTTT-CGCCTTTCGTGCGGTTCGGAACTTACCCCACAAATAATTTCTTTA 72274 Query 113 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT 172 |||||||| |||||||||||||| |||||| || ||||||| || ||| || || Sbjct 72273 CCTTAGGATGGTTATAGTTACGGCTGCCGTTCACCGGGGCTTCGGTGG-CTGGCTCCCTT 72215 Query 173 GCTCTAACAGATCCC-------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATA 225 | || | ||| || | ||| ||||||| ||| |||||||||||||| || || Sbjct 72214 G-TC-ATCAGGTCACTAACTTCCTTTACCTTCCGGCAGTGGGCAGGCGTCAGCCCCCTTA 72157 Query 226 CATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAG-TCGCTTGGGCCTATT 284 ||| ||||| |||||| || || |||||||||||||||||||| |||| | |||| | Sbjct 72156 CATGGTCTTACGACTTTGCGGAGCCCTGTGTTTTTGGTAAACAGTTCGCCCGAGCCTGGT 72097 Query 285 CTCTGCGGCC--TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCC 342 | ||||| || | | | |||||||| |||||| |||||| |||| |||||||| Sbjct 72096 CACTGCGACCCTTTTTGTGAGGAGGCACCCTTTCTCCTGAAGTTATGGGGCTATTTTGCC 72037 Query 343 GAGTTC 348 |||||| Sbjct 72036 GAGTTC 72031 >seq6 Length=53636577 Score = 172 bits (190), Expect = 1e-40 Identities = 116/130 (89%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 22238753 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 22238812 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 22238813 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTA 22238872 Query 127 TAGTTACGGC 136 |||||||||| Sbjct 22238873 TAGTTACGGC 22238882 >seq2 Length=43799612 Score = 80.6 bits (88), Expect = 6e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGT 158 |||||| |||||||||||||| |||||||||||||||||||| || ||||||| ||| Sbjct 23045069 GAATTTTGCTACCTTAGGACCATTATAGTTACGGCCGCCGTTCACCGGGGCTTCAGT 23045125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062286578176