Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq10676 475 1e-131 seq10675 197 4e-48 seq2 152 2e-34 seq9 136 1e-29 seq8 134 4e-29 seq1585 131 5e-28 seq4007 84.2 7e-14 >seq10676 Length=153368 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 100808 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 100867 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 100868 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 100927 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 100928 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 100985 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 100986 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 101045 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 101046 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 101105 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 101106 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 101165 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 101166 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 101225 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 101226 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 101285 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 101286 CGGTGAATTCGTTCCCG 101302 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 135731 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 135672 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 135671 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 135612 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 135611 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 135554 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 135553 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 135494 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 135493 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 135434 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 135433 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 135374 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 135373 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 135314 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 135313 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 135254 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 135253 CGGTGAATTCGTTCCCG 135237 >seq10675 Length=258426 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 117990 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 117931 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 117930 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 117871 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 117870 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 117812 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 117811 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 117756 Score = 181 bits (200), Expect = 3e-43 Identities = 182/234 (78%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 118525 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 118466 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| |||||||||||| ||||||| | ||| | Sbjct 118465 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACA---TATGAAC---- 118413 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 |||| | | ||| ||| || || || | ||||||| ||||||| || Sbjct 118412 --GAGA-AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 118356 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 118355 TCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAAACCCT 118302 >seq2 Length=43799612 Score = 152 bits (168), Expect = 2e-34 Identities = 119/142 (84%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 166 CATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACC 225 ||||| ||||||||||||||| ||| || |||||||||||||||||||||||| |||||| Sbjct 12542780 CATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGTGCAACC 12542839 Query 226 CTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG 285 || | | |||||||||| | || |||| || || || | |||||||||||| || ||| Sbjct 12542840 CTCATGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCG 12542899 Query 286 GAGGAAGGTGGGGACGACGTCA 307 ||||||||| ||| ||||||| Sbjct 12542900 AAGGAAGGTGAGGATGACGTCA 12542921 Score = 147 bits (162), Expect = 7e-33 Identities = 164/215 (76%), Gaps = 18/215 (8%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAA-GGAATTGACGGGGACCCGCACAAGCGGTGGAGCA 59 |||| |||||| |||||||||| |||||||||||| || ||||||||||||||||| Sbjct 7727276 TACGGTCGCAAGACCGAAACTCAAAAGGAATTGACGGGTGCCTGCACAAGCGGTGGAGCA 7727217 Query 60 TGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCT 119 ||||||||||||||| ||||||| ||||| |||||| ||||||| | ||| | Sbjct 7727216 TGTGGTTTAATTCGATACAACGCGCAGAACTTTACCAGCCCTTGACA---TATGAAC--- 7727163 Query 120 CTAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTT 172 |||| | | ||| ||| || || || | ||||||| ||||||| | Sbjct 7727162 ---GAGA-AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCT 7727107 Query 173 GTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGT 207 |||||||||||||||||||||||||| |||||||| Sbjct 7727106 GTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGT 7727072 >seq9 Length=38354807 Score = 136 bits (150), Expect = 1e-29 Identities = 137/177 (77%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 176 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTA 235 |||||||||| | | | ||||||||||||||| |||||||| ||| | | ||| Sbjct 24486813 GTCAGCTCGTTCCATAAAGTGTTGGGTTAAGTCCAACAACGAGCACAATTATCGTGTTTA 24486872 Query 236 GTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTG 295 |||| ||| || |||| || || || | ||||| |||||| || || || ||||||| Sbjct 24486873 GTTGTCATTGTTGAGTTTGGTACCCTTAACAGACTGTCGGTGATAAGCC-GAAGAAGGTG 24486931 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATG 352 ||| |||||||| |||||||| |||||||| |||||| |||||| |||||||||| Sbjct 24486932 AGGATGACGTCAAGTCATCATGTCCCTTATGCCTTGGGCGACACACATGCTACAATG 24486988 Score = 78.8 bits (86), Expect = 3e-12 Identities = 69/85 (81%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||||||||||||| || || ||||||| || ||||||| ||||||||||||||||| Sbjct 8985496 CTCAGTTCGGATTGCAGGCTACAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCC 8985437 Query 467 GATCAG-CATGCTACGGTGAATACG 490 | ||| ||| | |||||||| || Sbjct 8985436 GGGCAGCCATACGGCGGTGAATTCG 8985412 >seq8 Length=29681327 Score = 134 bits (148), Expect = 4e-29 Identities = 94/107 (88%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 25884211 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 25884152 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| ||||||| |||||||||||| |||||||| Sbjct 25884151 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACAT 25884105 >seq1585 Length=10544 Score = 131 bits (144), Expect = 5e-28 Identities = 104/124 (84%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 22 CAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACG 81 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | Sbjct 3750 CAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAG 3809 Query 82 CGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTT 141 |||||||||||| || |||||||| | || ||||| || | ||||| | |||| Sbjct 3810 CGAAGAACCTTATCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGT-GCCTT 3868 Query 142 CGGG 145 |||| Sbjct 3869 CGGG 3872 >seq4007 Length=4255 Score = 84.2 bits (92), Expect = 7e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 2508 TCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 2455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503839432960