Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4 273 3e-71 seq2 248 1e-63 seq6 224 2e-56 >seq4 Length=50002108 Score = 273 bits (302), Expect = 3e-71 Identities = 208/245 (85%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 27207866 TCAGTGTAGCGCGTGTGCGGCAGAGAACATCTAAGGGCATCACAGACCTATTATTGCCTC 27207925 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--T 133 |||||||| | | || | | | ||| ||||||||||||||| ||| || | | Sbjct 27207926 AAACTTCCTTGGCCTAAACGGCCATATTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCT 27207985 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||| |||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 27207986 CCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCG 27208045 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| | Sbjct 27208046 CTCCACCAACTAAGAACGACCATGCACCAGCACCCATAGAATCAAGAAAGAGCTCTCAGT 27208105 Query 254 CTGTC 258 ||||| Sbjct 27208106 CTGTC 27208110 Score = 129 bits (142), Expect = 9e-28 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||| |||||||||| |||||| Sbjct 20516612 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTATCCAGACAAATGGATCCACC 20516553 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 || | ||| |||||||| || ||||| ||| |||||||||||||| ||||| Sbjct 20516552 AAGTGAGACCGGCCATGGACGACCACACATTGAATCAAGAAAGAGTTATCA 20516502 >seq2 Length=43799612 Score = 248 bits (274), Expect = 1e-63 Identities = 215/260 (83%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8858416 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8858357 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||| |||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 8858356 CCTGTAATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 8858297 Query 122 -ACCAACCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || || | | |||| |||||||| | ||||||||||||||| | ||||| Sbjct 8858296 TTGTAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTTAGGTCTCGTTCGTTAAC-GAATT 8858238 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA-A 238 | ||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||| | Sbjct 8858237 TATCAGACCAAT-GCTCCACCATCTAAGAACGGCCATGCACCACCATCCATAGAATCACA 8858179 Query 239 GAAAGAGCTATCAATCTGTC 258 | ||||||| ||| |||||| Sbjct 8858178 GGAAGAGCTCTCAGTCTGTC 8858159 >seq6 Length=53636577 Score = 224 bits (248), Expect = 2e-56 Identities = 190/231 (82%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6588862 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGACATCACAGA 6588921 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| | ||| |||| | | || | | | ||||||| ||||||||||| ||| Sbjct 6588922 CCTGTTATTGCTTTAAATTTCCTTGGCCTAAATGGCTATAGTCCTTCTAAGAAGCCGGCC 6588981 Query 122 ACCAA-CCAT-AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || || || | | |||| |||| ||| | ||||||||||||||| | ||||| Sbjct 6588982 GTGAAGGGATGCCTCCACGTAGCTAATTAGTAGGCTGAGGTCTCGTTCGTTAACAGAATT 6589041 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 || |||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 6589042 AATCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCCCCCAT 6589092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796717591956