Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8 408 7e-112 seq3 408 7e-112 seq51 239 8e-61 seq4 197 2e-48 seq1354 163 5e-38 seq4783 91.5 3e-16 seq1 78.8 2e-12 >seq8 Length=29681327 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 17898263 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 17898205 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 17898204 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 17898145 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17898144 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 17898085 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 17898084 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 17898025 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 17898024 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 17897972 Score = 158 bits (174), Expect = 2e-36 Identities = 154/191 (81%), Gaps = 17/191 (9%) Strand=Plus/Minus Query 120 AATTCTGCTTCGGTATG--ATAGGAAGAGCCGACATCGAAG---GATCAAA---AAGCAA 171 ||||||||||| ||| || |||||||||||||| |||| ||| ||| | |||| Sbjct 23936293 AATTCTGCTTCACGATGTAATCGGAAGAGCCGACATGGAAGACGGATGAAACCAAGGCAA 23936234 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAA-GCCAGTTATCCCTGTGGTAACTTT-TCTGGC 229 |||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | Sbjct 23936233 CGTCGCTATGAACGCTTGGCTGCCACAATTTCAGTTATCCCTGTGGTAACTTTGTCTGAC 23936174 Query 230 ACCTCTAGCCTCAAATTTC----GAGG--GACT-AAAGGATCGATAGGCCACACTTTCAT 282 |||| |||| |||| || | ||| | || ||||||||||||||||| |||||| Sbjct 23936173 ACCTGTAGCTTCAAGTTGCCGGAAAGGTTGCCTGAAAGGATCGATAGGCCAGGCTTTCAC 23936114 Query 283 GGTTTGTATTC 293 |||| |||||| Sbjct 23936113 GGTTCGTATTC 23936103 >seq3 Length=29132933 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 3018037 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 3017979 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 3017978 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3017919 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3017918 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3017859 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 3017858 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 3017799 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 3017798 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3017746 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 10454422 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 10454364 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 10454363 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 10454304 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10454303 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 10454244 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 10454243 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 10454184 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 10454183 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 10454131 >seq51 Length=258232 Score = 239 bits (264), Expect = 8e-61 Identities = 147/157 (94%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 88061 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 88002 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256 ||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||| || || Sbjct 88001 CAAGCCAGTTATCCCCGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCT 87942 Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||||||||||| |||||| |||| ||||| Sbjct 87941 AAAGGATCGATAGGCCACGCTTTCACGGTTCATATTC 87905 >seq4 Length=50002108 Score = 197 bits (218), Expect = 2e-48 Identities = 120/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27204079 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 27204138 Query 227 GGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTT 286 | |||||||||| ||||||||||| || |||||||||||||||||||| |||||| |||| Sbjct 27204139 GACACCTCTAGCTTCAAATTTCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTT 27204198 Query 287 TGTATTC 293 |||||| Sbjct 27204199 CGTATTC 27204205 >seq1354 Length=12197 Score = 163 bits (180), Expect = 5e-38 Identities = 115/130 (88%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 4749 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 4691 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 4690 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 4631 Query 121 ATTCTGCTTC 130 |||||||||| Sbjct 4630 ATTCTGCTTC 4621 >seq4783 Length=3700 Score = 91.5 bits (100), Expect = 3e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 |||||| ||||| ||| |||||||||||||||||||| |||||| ||||||||||||||| Sbjct 2673 AAGGATTAAAAAACAATGTCGCTATGAACGCTTGGCTACCACAAACCAGTTATCCCTGTG 2732 Query 216 GTA 218 ||| Sbjct 2733 GTA 2735 >seq1 Length=26309735 Score = 78.8 bits (86), Expect = 2e-12 Identities = 60/70 (86%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 225 CTGGCACCTCTAGCCT-CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATG 283 ||| ||||||||| || |||||| ||| || ||||||||||||||||||| |||||| | Sbjct 23850411 CTGACACCTCTAGACTTCAAATTCCGAAGGTCTAAAGGATCGATAGGCCATGCTTTCACG 23850352 Query 284 GTTTGTATTC 293 ||| |||||| Sbjct 23850351 GTTCGTATTC 23850342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854308784256