Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq10676 230 5e-58 seq10675 197 3e-48 seq8 190 4e-46 seq3 154 3e-35 seq6 73.4 8e-11 >seq10676 Length=153368 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 100363 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 100306 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 100305 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 100246 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 100245 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 100186 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 100185 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 100139 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 100138 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 100082 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 100081 TCTTACGCGTTACTCACCCGTCCGCCACT 100053 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 136176 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 136233 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 136234 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 136293 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 136294 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 136353 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 136354 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 136400 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| | ||| || ||| ||||| | Sbjct 136401 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGT 136457 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||||||||| || Sbjct 136458 TCTTACGCGTTACTCACCCGTCCGCCACT 136486 >seq10675 Length=258426 Score = 197 bits (218), Expect = 3e-48 Identities = 178/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| ||| Sbjct 118955 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 119012 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 119013 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 119072 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||| ||| ||||||| || | ||| ||| |||||| |||| |||||| Sbjct 119073 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 119132 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 119133 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 119172 >seq8 Length=29681327 Score = 190 bits (210), Expect = 4e-46 Identities = 178/222 (80%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| ||| Sbjct 25884641 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 25884698 Query 59 CCATTGTCCAATATTCCC--CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||||||||||| |||||| |||||||||| ||||| |||||| || |||||||||||| Sbjct 25884699 CCATTGTCCAAGATTCCCGCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTC 25884758 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 || ||||| |||||| ||| ||||||| || | ||| ||| |||||| |||| |||| Sbjct 25884759 CCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTAC 25884818 Query 177 CTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 || |||||||| ||||| | || ||||||||| | ||||| Sbjct 25884819 CTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 25884860 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| | |||||| ||||| ||| |||||||||||| ||||| | ||||| Sbjct 29181376 GCTGGATCAGGCTTGCACCCATTTTCCAAGATTTCCCACTGCTGCC-CCCGTGGAAGTCT 29181434 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 || || |||||| || || || ||||| ||| ||||||| || Sbjct 29181435 GGGGCGCATCTCAGCCCCGGTATGGCTGATTTTCCGTAAAGACCAGCTA 29181483 >seq3 Length=29132933 Score = 154 bits (170), Expect = 3e-35 Identities = 231/316 (73%), Gaps = 19/316 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||| ||||||||||| || || | ||||||||||| Sbjct 16888879 CACGCGACATTG-CTCC-TCAGGTTTTCGCCCATTAAGGAAATTTTCTCACTGCTGCCTT 16888822 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||||| |||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 16888821 CCGTAGGAGCCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 16888762 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC-CGACCTAGGCTCA 207 | |||| | ||||| || ||| ||||| |||||||||| || | | ||| ||| | Sbjct 16888761 AATGATCATTGCCTTAGTAAGCTATTACTTCACCAACTATTACTTCACCAACTA-GCTAA 16888703 Query 208 TCTGATAGCGCAAGGCCC------GAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGG 261 || ||| ||| || ||| || | ||| |||| | | | | | || | || Sbjct 16888702 TC--ATA-CGCGAGCCCCTCCTCAGACGAATTCCTCCTTTTGCTCCTCAG-CCTACG-GG 16888648 Query 262 TATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTAC 319 ||||||| |||||||| ||| | ||| || ||| ||||| ||| || || |||| Sbjct 16888647 TATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCATACGCGTTAC 16888590 Query 320 TCACCCGTCCGCCGCT 335 ||| ||||||||| || Sbjct 16888589 TCATCCGTCCGCCACT 16888574 >seq6 Length=53636577 Score = 73.4 bits (80), Expect = 8e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 76 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||| ||||||| ||||||||||||||||| ||| | ||||| |||||| ||| Sbjct 15777879 CCACTGCTGTCTCCCGTGAGAGTCTGGACCGTGTCTTAGTCTCGGTGTGGCTGATCGTCC 15777820 Query 136 TCTCAGACCAGTTACGGATC 155 ||||||| || | ||| Sbjct 15777819 GAAAAGACCAGCTAAGCATC 15777800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071885553280