Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq10676 264 4e-68 seq10675 185 3e-44 seq5 145 3e-32 seq7130 102 3e-19 seq68 84.2 8e-14 >seq10676 Length=153368 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 104500 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 104441 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 104440 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 104381 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 104380 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 104321 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 104320 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 104268 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 104267 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 104214 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || |||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 104213 GCC--CCAGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 104161 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 104160 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 104101 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 104100 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 104051 Score = 264 bits (292), Expect = 4e-68 Identities = 345/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 132039 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 132098 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 132099 CCCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 132158 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| ||| |||||||||| | ||||||| | | | | ||| Sbjct 132159 TTCACCCAAGCTTCATCCTGGTCATAGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 132218 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 132219 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 132271 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 132272 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 132325 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || |||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 132326 GCC--CCAGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 132378 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 132379 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 132438 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 132439 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 132488 >seq10675 Length=258426 Score = 185 bits (204), Expect = 3e-44 Identities = 349/499 (70%), Gaps = 26/499 (5%) Strand=Plus/Plus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 141000 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 141059 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 141060 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 141119 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 141120 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 141179 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||||||||| ||||| |||||| | | |||||||| || | | | | | Sbjct 141180 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 141238 Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383 |||| || |||| | | || |||| || | || |||| || | | | || Sbjct 141239 ----ATTC-CAC---CTTTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTCTTCCCAT 141290 Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440 | ||||| | | ||| | ||||||| ||||||| | || || | || Sbjct 141291 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TG 141342 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498 ||| | || |||| |||||| ||| | | |||||| ||||| ||||||| | Sbjct 141343 ACTACTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCAT 141402 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 |||| |||||||||||||||||||||||||||| |||||||||||| |||| || || Sbjct 141403 AGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 141462 Query 559 AGGCTTAACGGGTGGTCCC 577 ||||||| |||||||||| Sbjct 141463 AGGCTTAGAGGGTGGTCCC 141481 >seq5 Length=45943323 Score = 145 bits (160), Expect = 3e-32 Identities = 203/280 (73%), Gaps = 21/280 (8%) Strand=Plus/Plus Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACA 380 ||||||| |||||||||||||||||||| || || | ||||| || || Sbjct 1450551 GCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--CA 1450605 Query 381 CAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGG 439 | | | | |||| |||||||||||||| |||||||| |||| | || ||| Sbjct 1450606 CTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA--GCCCC----AGG 1450659 Query 440 CACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAG 499 | | |||| || | ||| || | ||||||| || ||||||||||||||| | Sbjct 1450660 CTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGG 1450714 Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 |||| ||||||||| ||||||||||||||| | |||||||||||||| ||||||||||| Sbjct 1450715 GGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTA 1450774 Query 560 GGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||| |||||||| | |||||||||| ||| || Sbjct 1450775 GCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 1450814 >seq7130 Length=2701 Score = 102 bits (112), Expect = 3e-19 Identities = 121/163 (74%), Gaps = 11/163 (7%) Strand=Plus/Plus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| || ||||||||||| |||||||| |||| | || |||| | ||| Sbjct 2359 TCGCCGGTTCATTCTTCAACAGGCACGCGGTCAGA--GCCCC----AGGCTC-----CTC 2407 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 | || | ||| || | ||||||| || ||||||||||||||| ||||| ||||| Sbjct 2408 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTTTTTTC 2467 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 ||| |||| |||||||||| | |||||||||||||| ||||| Sbjct 2468 ACCCTTCCTTCACGGTACTACTTCGCTATCGGTCACCCAGGAG 2510 >seq68 Length=187690 Score = 84.2 bits (92), Expect = 8e-14 Identities = 151/220 (69%), Gaps = 17/220 (8%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||| ||||||||||||||| | | ||| || |||| Sbjct 61092 GCTGCGCCTCAACGCATTTTGGGGAGAACCAGCTAGCTCTTGGTTCGAGTGGC------- 61040 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||||| ||||| || | |||||||| | ||| ||| || ||||||| || Sbjct 61039 ----AACCACAACTCATCTGCTGATTTTTCAACATCAGTTAGTTTGGACCTCCACTTAGT 60984 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| | |||| ||| ||| |||||||||| | |||| || | | | | ||| Sbjct 60983 TTCACCCAAGATTCATTCTGGTCATAGATAGATCACCCAGGTTCGAGTCCATAAGCAGTG 60924 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| ||||||||||||||||||| Sbjct 60923 ACAAT----TGCCCTATGAAAACTCGCTTTCGCTACGGCT 60888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817405953024