Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq10676 219 8e-55 seq10675 132 1e-28 seq3 132 1e-28 seq8 123 5e-26 >seq10676 Length=153368 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 100340 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 100281 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 100280 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 100221 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 100220 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 100161 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 100160 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 100117 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 100116 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 100058 Query 300 CCACT 304 ||||| Sbjct 100057 CCACT 100053 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 136199 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 136258 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 136259 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 136318 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 136319 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 136378 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 136379 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 136422 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 136423 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 136481 Query 300 CCACT 304 ||||| Sbjct 136482 CCACT 136486 >seq10675 Length=258426 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 118995 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 119054 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| | || || || || |||| ||| |||| Sbjct 119055 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 119114 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 119115 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 119147 >seq3 Length=29132933 Score = 132 bits (146), Expect = 1e-28 Identities = 217/307 (71%), Gaps = 32/307 (10%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| |||||| | || | | ||||||||||| ||||||||| |||||||| Sbjct 16888863 TCAGGTTTTCGCCCATTAAGGAAATTTTCTCACTGCTGCCTTCCGTAGGAGCCTGGGCCG 16888804 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||| | || |||| |||| | | ||| || Sbjct 16888803 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAATGATCATTGCCTTAGT 16888744 Query 133 GGGCTATTA--TC-------------TCACCAACTACCTAATCGGCCGCGAGCCCATCTT 177 ||||||| || |||||||||| |||||| ||||||||| || Sbjct 16888743 AAGCTATTACTTCACCAACTATTACTTCACCAACTAGCTAATCATACGCGAGCCCCTC-C 16888685 Query 178 TCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCG 237 ||| || || || || | ||| ||||| | | || | ||||||||| Sbjct 16888684 TCA--GACGAA---TTCCTC-----CTTTTGC--TCCTCAGCC--TACG-GGTATTAGCA 16888640 Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297 |||||||| ||| |||| ||| || |||||||| | ||| |||||||| ||||| Sbjct 16888639 GCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CATACGCGTTACTCATCCGTC 16888581 Query 298 CGCCACT 304 ||||||| Sbjct 16888580 CGCCACT 16888574 >seq8 Length=29681327 Score = 123 bits (136), Expect = 5e-26 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCC--CACTGCTGCCTCCCGTAGGAGT 64 |||| |||||| || | |||||||| ||| || ||| |||||||||| ||||| ||||| Sbjct 25884681 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCGCCACTGCTGCCCCCCGTGGGAGT 25884740 Query 65 CTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTC 124 | |||||||||||||||||| |||||| | || || || || |||| ||| || Sbjct 25884741 CCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATC 25884800 Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||||| || ||| || |||||||||||||| Sbjct 25884801 GGCTTGGTCAGCCTTTACCTAACCAACTACCTAAT 25884835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998293410816