Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq10676 268 1e-69 seq10675 199 6e-49 seq5 156 7e-36 >seq10676 Length=153368 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 106443 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 106384 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 106383 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 106324 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 106323 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 106264 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 106263 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 106204 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 106203 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 106171 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 130096 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 130155 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 130156 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 130215 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 130216 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 130275 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 130276 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 130335 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 130336 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 130368 >seq10675 Length=258426 Score = 199 bits (220), Expect = 6e-49 Identities = 196/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||||||| || ||| ||| || ||||| ||| | Sbjct 138976 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTGTCATAACAACCGGTAC 139035 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC-CT 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | || || Sbjct 139036 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCGCT 139095 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 139096 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 139155 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 139156 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 139215 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 139216 AGTCGACATCG 139226 >seq5 Length=45943323 Score = 156 bits (172), Expect = 7e-36 Identities = 110/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 ||||||||||||||||| ||| || ||||||||| || |||||||| |||||| || Sbjct 25238236 CCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGG 25238177 Query 167 ACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGC 226 ||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||| | Sbjct 25238176 ACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAAC 25238117 Query 227 CCAACC 232 |||||| Sbjct 25238116 CCAACC 25238111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780719246736