Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq10676 269 6e-70 seq10675 170 5e-40 seq3 170 5e-40 seq8 161 2e-37 seq6 77.0 8e-12 >seq10676 Length=153368 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 100365 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 100306 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 100305 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 100246 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 100245 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 100186 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 100185 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 100137 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 100136 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 100079 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 100078 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 100036 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 100035 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 99992 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 136174 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 136233 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 136234 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 136293 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 136294 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 136353 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 136354 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 136402 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 136403 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 136460 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 136461 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 136503 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 136504 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 136547 >seq10675 Length=258426 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 118955 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 119014 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| || | Sbjct 119015 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGG 119074 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| ||| || ||| ||| ||||| Sbjct 119075 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 119134 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 119135 CCAACTACCTAAT 119147 >seq3 Length=29132933 Score = 170 bits (188), Expect = 5e-40 Identities = 280/396 (71%), Gaps = 37/396 (9%) Strand=Plus/Minus Query 22 TTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACT 81 |||| | | |||||| ||| ||| | ||||| || |||||||| | || || | |||| Sbjct 16888888 TTCTACCTCCACGCGACATTGCTCC-TCAGGTTTTCGCCCATTAAGGAAATTTTCTCACT 16888830 Query 82 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCA 141 ||||||| ||||||||| |||| |||||||||||| |||||||||||| |||||||||| Sbjct 16888829 GCTGCCTTCCGTAGGAGCCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCG 16888770 Query 142 GACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC-CCATC 200 ||||||||| |||| | |||| || || ||||| | ||||||| || ||| | Sbjct 16888769 GACCAGCTAATGATCATTGCCTTAGTAAGCTATTACTTCACCAACTATTACTTCACCAAC 16888710 Query 201 TGGGT--TCATCCGATAG-------TGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCG 251 | | | |||| || || | ||| |||| ||| ||| |||| || | | Sbjct 16888709 TAGCTAATCATACGCGAGCCCCTCCTCAGA----CGAA-TTCCTCCT-TTTGCTCCTCAG 16888656 Query 252 ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC 311 | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 16888655 CC--TACG-GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCAT 16888599 Query 312 AGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGT 371 | | ||||||| |||||||||||| ||| || || |||| |||| Sbjct 16888598 ACGCGTTACTCATCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGT 16888556 Query 372 TCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 |||||||||||||||| || | || |||| ||||| Sbjct 16888555 CCGACTTGCATGTGTTAAGCATACCACCAGTGTTCA 16888520 >seq8 Length=29681327 Score = 161 bits (178), Expect = 2e-37 Identities = 154/195 (79%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 25884641 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 25884700 Query 62 ATTGTGCAATATTCCC--CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 ||||| ||| |||||| |||||||||| ||||| |||||| || |||||||||||| || Sbjct 25884701 ATTGTCCAAGATTCCCGCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 25884760 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 ||||||||| || ||| |||||||||| | ||| ||| || ||| ||| ||||| Sbjct 25884761 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 25884820 Query 180 CGCCAACTAGCTAAT 194 ||||||| ||||| Sbjct 25884821 AACCAACTACCTAAT 25884835 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || |||| ||||||||||| |||||| | ||| ||| |||||||||||| ||||| | || Sbjct 29181373 ATTGCTGGATCAGGCTTGCACCCATTTTCCAAGATTTCCCACTGCTGCC-CCCGTGGAAG 29181431 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||| || |||||| || || |||||| | ||| |||||||||| Sbjct 29181432 TCTGGGGCGCATCTCAGCCCCGGTATGGCTGATTTTCCGTAAAGACCAGCTA 29181483 >seq6 Length=53636577 Score = 77.0 bits (84), Expect = 8e-12 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||| ||||||| ||||||||||||||||| ||| | ||||||||| || ||| Sbjct 15777879 CCACTGCTGTCTCCCGTGAGAGTCTGGACCGTGTCTTAGTCTCGGTGTGGCTGATCGTCC 15777820 Query 137 TCTCAGACCAGCTAGGGATC 156 |||||||||| | ||| Sbjct 15777819 GAAAAGACCAGCTAAGCATC 15777800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222269496576