Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq10676 333 8e-89 seq10675 262 1e-67 seq8 255 2e-65 seq3 132 1e-28 >seq10676 Length=153368 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 100174 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 100233 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 100234 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 100293 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 100294 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 100353 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 100354 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 100413 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 100414 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 100473 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 100474 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 100515 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 136365 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 136306 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 136305 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 136246 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 136245 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 136186 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 136185 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 136126 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 136125 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 136066 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 136065 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 136024 >seq10675 Length=258426 Score = 262 bits (290), Expect = 1e-67 Identities = 257/328 (78%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || || Sbjct 119147 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 119088 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 119087 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 119028 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | | Sbjct 119027 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 118968 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | |||||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 118967 TCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCC 118908 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 118907 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 118848 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 || ||||||||||| |||||| |||| Sbjct 118847 CT-AGGCGTAAAGGGCACGTAGGCGGTT 118821 >seq8 Length=29681327 Score = 255 bits (282), Expect = 2e-65 Identities = 257/330 (78%), Gaps = 7/330 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || || Sbjct 25884835 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 25884776 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG-- 285 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||| Sbjct 25884775 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGCG 25884716 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC- 344 ||||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | Sbjct 25884715 GGAATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCA 25884656 Query 345 -TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGC 401 ||| | |||||||||||| || || || | || ||||| ||| ||||| ||||| Sbjct 25884655 ATTCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGC 25884596 Query 402 CCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| Sbjct 25884595 CCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAAT 25884536 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||| ||||||||||| |||||| |||| Sbjct 25884535 GACT-AGGCGTAAAGGGCACGTAGGCGGTT 25884507 Score = 77.0 bits (84), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 231 ATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAAT 290 ||| |||| | || |||||| || ||| ||| | ||||| |||||||||||| ||| Sbjct 29181464 ATCAGCCATACCGGGGCTGAGATGCGCCCCAGACTTCCACGGG-GGCAGCAGTGGGAAAT 29181406 Query 291 ATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGG 350 ||| | |||||| ||||||||| |||||| | |||| ||| | || | Sbjct 29181405 CTTGGAAAATGGGTGCAAGCCTGATCCAGCAATATTGGGTGAAGAATG--GCAATTTCGC 29181348 Query 351 TCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCT 408 |||||||||| | || || | | ||| ||||| ||||||| | ||| | ||| Sbjct 29181347 TCGTAAAGCTTTTTCGTCGAGTGCGGGATCATGACATGACTTGAGAAATAAG-CATGGCC 29181289 Query 409 AACTACGTGCCAGCAGCCGCGGTA 432 |||| ||||||||||| || ||| Sbjct 29181288 AACTTGGTGCCAGCAGCTGCTGTA 29181265 >seq3 Length=29132933 Score = 132 bits (146), Expect = 1e-28 Identities = 125/158 (79%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| | |||| |||||| ||||| | ||||| |||| | | |||||| ||||| Sbjct 16888723 TAGTTGGTGAAGTAATAGCTTACTAAGGCAATGATCATTAGCTGGTCCGAGAGGATGATC 16888782 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 |||||| ||| |||||||||||| ||| ||||||||| ||||||||||| | || || Sbjct 16888783 AGCCACACTGGGACTGAGACACGGCCCAGGCTCCTACGGAAGGCAGCAGTGAGAAAATTT 16888842 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 | ||||||| ||| ||||| | ||||| | |||||| Sbjct 16888843 CCTTAATGGGCGAAAACCTGA-GGAGCAATGTCGCGTG 16888879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497440116224