Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2 311 2e-82 seq6 269 5e-70 seq4 250 5e-64 seq1484 145 1e-32 >seq2 Length=43799612 Score = 311 bits (344), Expect = 2e-82 Identities = 229/263 (87%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||||||||||| | | | || | | |||||||||||||||| |||||| Sbjct 8858298 GCCGGCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATTACAGGT 8858357 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 8858358 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTT 8858417 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 8858418 CA-CACCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 8858475 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 8858476 CATTGCAATTGTTGGACTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 8858535 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 8858536 TGACTACGTCCCTGCCCTTTGTA 8858558 >seq6 Length=53636577 Score = 269 bits (298), Expect = 5e-70 Identities = 220/263 (84%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 |||||||||||||| ||||||| | | | || | | |||| ||| | |||||||||||| Sbjct 6588980 GCCGGCTTCTTAGAAGGACTATAGCCATTTAGGCCAAGGAAATTTAAAGCAATAACAGGT 6588921 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 6588920 CTGTGATGTCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTT 6588861 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || | ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 6588860 CA-CGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 6588803 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 ||||||||| ||| |||||||||| |||| | ||||||||||| ||||||||| ||||| Sbjct 6588802 TATTGCAATTGTTGGTCTTCAACGAAGAATTCTTAGTAAGCGCGAGTCATCAGCTCGCGT 6588743 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| || |||| ||||||||||| Sbjct 6588742 TGACTATGTCCTTGCCCTTTGTA 6588720 >seq4 Length=50002108 Score = 250 bits (276), Expect = 5e-64 Identities = 248/316 (78%), Gaps = 14/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 27208019 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 27207964 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||| ||| | | | || | | |||||||||||||||||| ||||||||||| Sbjct 27207963 TCTTAGAGGGAATATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAATAGGTCTGTGAT 27207904 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 ||||||||||||||| ||||||| ||||||||||||| | ||| ||||||| || | Sbjct 27207903 GCCCTTAGATGTTCTCTGCCGCACACGCGCTACACTGATGTATTCAATGAGTTCA-CATC 27207845 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||| | ||| | |||||||||| | ||| | | ||||| |||||||||| |||| || Sbjct 27207844 TTGGCTGACAGGCCCGGGTAATCTT-TGAAATTTTATCGTGATGGGGATAGATCATTACA 27207786 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| | ||||||| ||||| ||| ||||||| ||||| ||| ||||||| ||| Sbjct 27207785 ATTGTTGGTATTCAACG-GGAATTTCTAAGAAGCGCGAGTCATAAGCTAGCGTTGAGTAC 27207727 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 27207726 GTCCCTGCCCTTTGTA 27207711 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 239 GATAGAGCAT-TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCA--T 295 ||||| ||| | | ||| ||| ||||||||||||||| |||||||||| || |||| | Sbjct 20516809 GATAGGTCATCTCCGATTGTTGTTCTTCAACGAGGAATTCCTAGTAAGC-CGAGTCATCT 20516867 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 |||| |||||||| ||| |||||||||||| Sbjct 20516868 CAGCTCGCGTTGACAACGACCCTGCCCTTTG 20516898 >seq1484 Length=6986 Score = 145 bits (160), Expect = 1e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||||||||||| Sbjct 4741 TCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGC 4682 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||| ||||||||||||||||||| Sbjct 4681 GAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 4642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947098876928