Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq10676 127 4e-27 seq10675 111 3e-22 seq8 104 5e-20 seq3 82.4 2e-13 >seq10676 Length=153368 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 100442 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 100394 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 100393 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 100341 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 100340 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 100281 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 100280 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 100221 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 100220 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 100182 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 136097 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 136145 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 136146 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 136198 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 136199 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 136258 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 136259 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 136318 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 136319 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 136357 >seq10675 Length=258426 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| || Sbjct 118973 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 119032 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| || ||||| || | ||| Sbjct 119033 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 119092 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 119093 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTAC 119152 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 119153 GCAGGCTCATCAAACAGCG 119171 >seq8 Length=29681327 Score = 104 bits (114), Expect = 5e-20 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCT-- 162 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| Sbjct 25884659 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCGC 25884718 Query 163 CACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCT 222 |||||||||| ||||| ||||| || |||||||||||| || ||||| || | ||| Sbjct 25884719 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCG 25884778 Query 223 CTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGA 282 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| Sbjct 25884779 AAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACT 25884838 Query 283 ACGCATCCCCATCGTACACCG 303 ||||| | |||| ||| || Sbjct 25884839 ACGCAGGCTCATCAAACAGCG 25884859 >seq3 Length=29132933 Score = 82.4 bits (90), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 ||| ||||| || | ||| | ||| | ||| ||||| | || || ||||||||||| Sbjct 16888883 CCTCCACGCGACATTGCTCCT-CAGGTTTTCGCCCATTAAGGAAATTTTCTCACTGCTGC 16888825 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || ||||||||| ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 16888824 CTTCCGTAGGAGCCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 16888768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068685894912