Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4 471 1e-130 seq3 260 4e-67 seq8 167 7e-39 seq87 158 4e-36 seq1155 154 4e-35 seq2 141 3e-31 >seq4 Length=50002108 Score = 471 bits (522), Expect = 1e-130 Identities = 409/506 (81%), Gaps = 36/506 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| | || ||||||| | |||||||| Sbjct 27217495 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGAATTGTTATTTATCGACACTACCT 27217553 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 27217554 CCCCGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCTTTGGATGTGGTAGCCGTT 27217613 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||| ||||||| ||||||||| | |||||| ||| ||||||| ||||||||| Sbjct 27217614 TCTCAGGCCCCCTCTCTGGAATCGAAGCATAATTCTTCGTCACCCGTTACCACCATGGTA 27217673 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| || Sbjct 27217674 GGCCACTATCCTACCATCGAAAGTTGATAGGGCATAAATTTGAATGATGCGTCGCCAGCA 27217733 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 | |||| | |||||| ||| | |||| |||||||| || ||| | | |||| Sbjct 27217734 CAAAGGACTTGCGATCCGTCGATTTATCATGAATCATCA--GAG---CAACGGGC----- 27217783 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 | | || | |||||||||| | ||| |||||||||||| Sbjct 27217784 -------------AGAGCCAGC---------GTCGGGGTTTGTTGCACGTATTAGCTCTA 27217821 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||||||| |||||||||| ||||||| ||| |||||| |||| ||||||||||||||| Sbjct 27217822 GAATTACTACGGTTATCCGAGTAGTAA-TTACCATCAAACAAACTATAACTGATTTAATG 27217880 Query 420 AGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTT 478 |||||||| ||||||||| || | ||| | | ||||||| ||||||||||||||||||| Sbjct 27217881 AGCCATTCCCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTT 27217940 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| Sbjct 27217941 TGAGACAAGCATATGACTACTGGCAG 27217966 Score = 329 bits (364), Expect = 1e-87 Identities = 216/237 (91%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 26945783 TATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGTGCGCCTGCTGCCTTCC 26945842 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 26945843 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCAGAATCGAACCCTAATTCTCCGTCA 26945902 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26945903 CCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 26945962 Query 223 AATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 ||||| | ||||| || ||||||||||||| ||| |||||| ||||||| || Sbjct 26945963 AATGATGCGTCGCCAGCAAAAAGGCCATGCGATCCGTCGAGTTATCTTGAATCATCA 26946019 Score = 315 bits (348), Expect = 2e-83 Identities = 259/308 (84%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 206 GATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTT 264 |||||||||||||||||||||| | ||||| || ||| ||||||||||| ||| |||| Sbjct 31711673 GATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACAAAGGCCATGCGATCCGTCGAGTT 31711614 Query 265 ATTATGAATCACCAAGGAGCCCCGA----AGG--GCGTTGGTTTTTTATCTAATAAATAC 318 || |||||||| || |||| || || |||| | ||||||||||||||| | Sbjct 31711613 ATCATGAATCATCA--GAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGC 31711556 Query 319 ACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 | ||||||| ||||||||||||| | ||| ||||||||||||||||||| |||||||||| Sbjct 31711555 ATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCC 31711496 Query 378 ATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||||| | ||| |||||| |||| ||||||||||||||||||||||||||||||||| Sbjct 31711495 GAGTAGTA-GTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCAC 31711437 Query 438 TGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 496 || | ||| || ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 31711436 AGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACT 31711377 Query 497 ACTGGCAG 504 |||||||| Sbjct 31711376 ACTGGCAG 31711369 Score = 232 bits (256), Expect = 2e-58 Identities = 225/281 (80%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 230 CATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCC 287 ||||||| || | ||||||||| ||| ||| |||||| |||||||| || |||| | Sbjct 45912819 CATCGCCAGCACTAAGGCCATGTGATCCGTCGAGTTATCATGAATCATCAGAGGAACGGG 45912760 Query 288 GAAGGGC---GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA 343 | | | || | |||||||||||||||| || | |||| |||||||| ||||| Sbjct 45912759 CAGAGTCCGTGTCGACTTTTTATCTAATAAATGCATCTATTCCAAAAGTCGGGATTTTT- 45912701 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||| |||| ||||||||| |||||||||| ||||| || ||| |||||| |||| Sbjct 45912700 GCATGTATAAGCTATAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAAC 45912642 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACA 462 |||||||||||||||||| |||||||||||||| || | ||| | | | ||||| ||| Sbjct 45912641 TATAACTGATTTAATGAGCTATTCGCAGTTTCACAGTCTGAATTCGTTCAAACTTATACA 45912582 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||| |||||||||| |||| ||||| ||||| Sbjct 45912581 TGCATGGCTTAATATTTGAGACAATCATAAGACTATTGGCA 45912541 >seq3 Length=29132933 Score = 260 bits (288), Expect = 4e-67 Identities = 183/205 (89%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 3021230 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 3021171 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||||| |||||| | ||| |||||| |||| |||||||||||||||| Sbjct 3021170 AATTACTACGGTTATCCGAGTAGTA-GTTACCATCAAACAAACTATAACTGATTTAATGA 3021112 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 3021111 GCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTT 3021052 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 3021051 GAGACAAGCATATGACTACTGGCAG 3021027 >seq8 Length=29681327 Score = 167 bits (184), Expect = 7e-39 Identities = 149/183 (81%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||| ||| |||| |||||| |||| |||||||||||||||||| Sbjct 23928975 GTACTCATTCCAATTACA-GACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 23928918 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | ||||||| ||||||||||||||||| | ||| ||| | || |||||||||| || Sbjct 23928917 CACCGTGTCAGGATTGGGTAATTTGCGTGTCTGTTGCTTCAATTAGATGTGGTAGTTTTT 23928858 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAA-CCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||| ||||||||||| || |||||| ||| ||||||| |||||||| Sbjct 23928857 TCTCAGGCTATTTCTCCGGAATCAAATTACTAATTATACGTAACCCGTTAGCACCATGGT 23928798 Query 180 AGG 182 ||| Sbjct 23928797 AGG 23928795 >seq87 Length=2272 Score = 158 bits (174), Expect = 4e-36 Identities = 107/119 (90%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 || ||| |||||| |||| ||||||||||||||||||||||||||||||||| || | | Sbjct 1098 AGTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAA 1157 Query 446 TTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1216 >seq1155 Length=14115 Score = 154 bits (170), Expect = 4e-35 Identities = 297/422 (70%), Gaps = 51/422 (12%) Strand=Plus/Plus Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCC 191 ||||||| | |||||| ||| || | ||||||| ||||||||||||||| |||| Sbjct 517 CTCTCCGAAGACGAACC-TAAACCCAGCTCACCCGTTACCACCATGGTAGGCCACAATCC 575 Query 192 TACCA-TCGAAAGTTGATAGGG--CAGAAATTTGAATGAACCA---TCGCC--------- 236 ||||| |||||| |||||||| |||||||| ||| || | | ||||| Sbjct 576 TACCAATCGAAAATTGATAGGAGACAGAAATTCGAACGATCAAGCGTCGCCATGCACGAA 635 Query 237 -GGCT-CAAGGCCATGCGATTCGTT-AAGTTATTATGAA--TCA--CCAAGGA--GCCCC 287 ||| ||| |||| | ||| || |||| ||||| ||| || || | | || Sbjct 636 AGGCAGCAAAGCCAGGTATCCCGTAGAACTTATCATGAACCTCAATCCGAGCAAAGGACC 695 Query 288 GAAGG-GCGTTGGTTTTTTA---TCTAATAAATACAC---CCCTT---CCGAAGTCGGGG 337 || || | ||||| ||||| |||| || | ||| | ||| |||||| Sbjct 696 GAGCCCGCATCACCCTTTTAGCCTCTAAGAAATGCATAAACACTTTTACAGAAATCGGGG 755 Query 338 TTTTTAGCATGTATTAGCTCTAGAATTAC-CACG--GTTATCCATGTAGTAAGGTACTAT 394 ||| | ||| |||| ||||||||||| || |||| |||||| |||||| | | | | Sbjct 756 TTTATTGCACGTATAAGCTCTAGAATGACTCACGCCGTTATCAGAGTAGTA-GTTCCCCT 814 Query 395 CAAATAAACGATAACTGATT--TAATGAGCCATTCGCAGTTTCACTGTATAG-------- 444 |||| |||| | || |||| |||||||||||||||||| ||||| || Sbjct 815 CAAACAAACTAGAAATGATCGGTAATGAGCCATTCGCAGTGTCACTAGATGACGCGCTGC 874 Query 445 -ATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 875 AATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 934 Query 503 AG 504 || Sbjct 935 AG 936 >seq2 Length=43799612 Score = 141 bits (156), Expect = 3e-31 Identities = 104/120 (87%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 148 CCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA 207 |||||||| |||| |||| || |||||||||||||||||||||||||||||||||||| Sbjct 14825718 CCTAATTCTCCGTCACCCTTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA 14825659 Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTAT 266 ||| |||||||||||||||| | ||||| || | ||||||||||||| ||| |||||| Sbjct 14825658 TAGAGCAGAAATTTGAATGATGCGTCGCCAGCACAAAGGCCATGCGATCCGTCGAGTTAT 14825599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510238749696