Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq2371 158 1e-33 seq6 140 3e-28 >seq4 Length=50002108 Score = 170 bits (188), Expect = 2e-37 Identities = 370/546 (68%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| ||||| ||||||||||| | ||||| |||||| | ||| |||| Sbjct 15358594 ATGTACAAGAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATCTCTCCGGAGAC 15358653 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||||| | | | ||| ||| || | || ||||| ||||| || | || Sbjct 15358654 ACACGCGACTGGGAGAATCTCAACGA-CGGAGAGCGCCACTTCATCAAACACGTCCTAGC 15358712 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| ||||| | || ||| | || Sbjct 15358713 CTTCTTCGCCGCCTCCGACGGAATCGTCCTGGAGAACCTCGCCTCCCGGTTCATGTCCGA 15358772 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || || ||||||||| ||||||||||||||||| || || ||||| |||| Sbjct 15358773 CGTCCAGGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATCCA 15358832 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| |||||||| || | || |||| || ||||||| ||| ||| | || | Sbjct 15358833 CTCAGAGATGTATAGCCTCCTGCTCGACACCTACATCAAGGATAACAAGGAGAGGGACCA 15358892 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTC 61452 | ||| ||||||||||| || || | | | ||| ||| || | |||||| | Sbjct 15358893 TCTCTTCCGGGCCATCGAGACCATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCCATG 15358950 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGT 61511 || |||||| | | | | || || | || | ||| | | || || || || Sbjct 15358951 AAGTGGATCGACGG---ATCTCAGACTTTCGCGGAGAGGATCG-TCGCCTTCGCCTGCGT 15359006 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || || | || ||| ||| || | | ||||| ||| | ||||| ||||| || Sbjct 15359007 GGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGTGGGCT 15359066 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| |||||||||||| ||| ||| |||| || | |||||||| | || || || Sbjct 15359067 CATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGGGCTTCACTGCGA 15359126 Query 61632 TTTTGC 61637 ||| || Sbjct 15359127 TTTCGC 15359132 >seq2371 Length=6673 Score = 158 bits (174), Expect = 1e-33 Identities = 277/402 (69%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 6237 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 6296 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | ||||| ||||| | ||| |||||| |||||||||| | | || Sbjct 6297 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGCAAAACCTCAACG 6356 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | ||| || | ||| ||| | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 6357 A-CGGCGAGCGACACTTCGTCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATC 6415 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| |||||| | |||||| | || || || || || ||||| || Sbjct 6416 GTCCTCGAGAATCTCGCCTCCCGTTTCATGTCCGACGTCCAGGTCTCCGAGGCCCGCGCC 6475 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||| |||||||||||| | ||| | Sbjct 6476 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCTTA 6535 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || ||||||| || ||| | || | | ||| || ||||||||||| Sbjct 6536 GACACTTACATCAAAGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATCGAGACGATC 6595 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC 61461 || || ||| || || | |||||||| || |||||| Sbjct 6596 CCTTGCGTAAAGAAAAAGGCCCAATGGGCCTTGAAGTGGATC 6637 >seq6 Length=53636577 Score = 140 bits (154), Expect = 3e-28 Identities = 254/370 (69%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 17375715 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGAC 17375774 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | |||||||||| | | ||| ||| || | || ||||| ||||| || | Sbjct 17375775 ACCCGCGACTGGGAGCAAAACCTCAACGA-CGGCGAGCGCCACTTCATCAAACACGTCCT 17375833 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| |||||| |||||| | |||||| | Sbjct 17375834 CGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAATCTCGCCTCCCGTTTCATGTC 17375893 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || || || || ||||| || ||||||||||||||||| || || ||||| | Sbjct 17375894 CGACGTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCGATCGAGAACAT 17375953 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||| ||||||||||| | | | ||||| ||||||| || ||| | || Sbjct 17375954 CCACTCCGAGATGTACAGCCTCTTGTTAGATACTTACATCAAAGACAACAAGGAGAGGGA 17376013 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 | | ||| || |||||||| || || || ||| ||| || | |||||||| Sbjct 17376014 CCATCTCTTCCGCGCGATCGAGACCATCCCTTGCGTCAAGAAGAAGGCCCAATGGGCCTT 17376073 Query 61452 CAATTGGATC 61461 || |||||| Sbjct 17376074 GAAGTGGATC 17376083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397516270936640