Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq10676 578 5e-160 seq3905 255 7e-63 seq3 212 8e-50 seq3442 82.4 1e-10 >seq10676 Length=153368 Score = 578 bits (640), Expect = 5e-160 Identities = 721/980 (74%), Gaps = 10/980 (1%) Strand=Plus/Minus Query 188871 TACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG- 188929 |||| | |||||||| || | || ||||| ||||| ||||||| ||||| ||| | | Sbjct 1306 TACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTAC-CTTATTGA 1248 Query 188930 CTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989 | ||||| | || || |||| || | ||||| || || ||||| |||||||| | Sbjct 1247 CCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 1188 Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049 | || ||||| || |||| || || | || |||||||| || || || ||||| || Sbjct 1187 TTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTA 1128 Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109 | ||| | || || |||||| | || || || || ||||||||||| || || | | Sbjct 1127 TTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATCTGGGAAGCTGCATCCGTTG 1068 Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCA 189169 |||| ||||| |||||||||||||||| |||| | || | ||||| | | || Sbjct 1067 ATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG-- 1010 Query 189170 TCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTT 189226 | || || | | |||||||||||||||||||| || |||||| ||||||||||||| Sbjct 1009 TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTT 951 Query 189227 GGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTAT 189285 |||| ||| |||| || || || ||||||||||| || | || || || || |||| Sbjct 950 GGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 892 Query 189286 CCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAAC 189345 || |||||||||| ||| ||||| | ||||| | || ||| ||| || |||||| Sbjct 891 CCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 832 Query 189346 TACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGA 189405 | ||| |||| ||||| || ||||||||||| || |||||||| || |||||| | || Sbjct 831 TTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGT 772 Query 189406 GTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCT 189465 || || ||||| ||||| || || || || || ||||||||||| | || || ||| Sbjct 771 GTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCT 712 Query 189466 TCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAA 189525 || | | |||||||| |||| || || || | || |||| || || ||| Sbjct 711 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGGTACAGATTCGGTCAA 652 Query 189526 GAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAA 189585 ||||||||||| |||||||| || |||||||| || ||||| || || | ||||||||| Sbjct 651 GAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAA 592 Query 189586 TATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTG 189645 ||||| |||||||| || ||||| | || |||||| | || || ||||| || || Sbjct 591 TATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTA 532 Query 189646 GGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAAC 189705 ||||| |||||||| || | || | || || ||||| |||||||| ||||| ||||| Sbjct 531 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 472 Query 189706 TTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTC 189765 ||||| ||||| | ||||| ||||||| |||||| | || || ||||| || || | Sbjct 471 TTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 412 Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTT 189825 ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 411 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 352 Query 189826 GATCTGGCAGCAGCAGAGTC 189845 || || || || | ||||| Sbjct 351 GACCTAGCTGCTGTTGAGTC 332 Score = 545 bits (604), Expect = 3e-150 Identities = 731/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 31980 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32039 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 32040 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32099 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 32100 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32159 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 32160 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32219 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 32220 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32279 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || |||||||| |||||||| |||| || || ||| | ||||| |||||||| || || Sbjct 32280 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32339 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 32340 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32398 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | |||||||| || || || || |||||||| |||||||||| ||||| || || Sbjct 32399 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32458 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| || || || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 32459 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32518 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| || || ||| | ||||| | || || | | || || || Sbjct 32519 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 32578 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| |||||||| |||||||| | |||||||||||| ||||| || || || Sbjct 32579 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 32638 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 32639 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 32698 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 32699 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 32758 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | | || | | ||||| ||| | ||||| || Sbjct 32759 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 32818 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 32819 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 32878 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 || || |||||||| ||||| || |||||| |||| | ||| |||| || ||||| Sbjct 32879 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 32938 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 32939 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32992 >seq3905 Length=4339 Score = 255 bits (282), Expect = 7e-63 Identities = 307/415 (74%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 190272 CTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAG 190331 || ||||||||||| || |||||||| |||||||| |||| || || ||| | ||||| Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 190332 TTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCC 190390 |||||||| || || ||| || | | || ||||| ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTTTGGTCC 1274 Query 190391 TATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTT 190450 || |||||||||||| |||||||| || || || || |||||||| |||||||||| Sbjct 1275 AATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTT 1334 Query 190451 CGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCA 190510 ||||| || ||||| || | || || || ||| ||||||| || || || || || Sbjct 1335 TGCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCA 1394 Query 190511 TAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACT 190570 ||| |||| ||||||| || || |||||||| || || ||| | ||||| | || || Sbjct 1395 TAATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCT 1454 Query 190571 ACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGC 190630 | | || || ||||||| |||||||| |||||||| | |||||||||||| || Sbjct 1455 GTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGC 1514 Query 190631 AAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTC 190685 ||| || || || || || || |||| ||||| || ||||| |||||| Sbjct 1515 AAATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 212 bits (234), Expect = 8e-50 Identities = 369/529 (70%), Gaps = 6/529 (1%) Strand=Plus/Plus Query 190017 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTCGCA 190076 || |||||||| ||||| ||||||||||| || | || ||||| ||| ||| || | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 190077 ATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACACCCACGGACTCGCA 190136 | || || ||| | || || || || |||| || ||||| || || ||| | || Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGCT 2931893 Query 190137 AGTAGTTACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCT 190196 ||| || | || ||| | | || | || | || || || || |||||| || | Sbjct 2931894 AGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAATAGT 2931953 Query 190197 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTC-GTCAGGTG 190255 | |||||| || || | || |||||||||| | ||||| ||||| ||| | || Sbjct 2931954 TTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTC-GTTG 2932011 Query 190256 GATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGG 190315 | ||| | | || || |||| |||||| || |||||| | ||||||| |||| | Sbjct 2932012 GTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATAAG 2932071 Query 190316 ATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTA 190374 || ||| | ||||| |||||||| || || ||| || | | || ||||| ||||| | Sbjct 2932072 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 2932130 Query 190375 TTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTC 190434 | | ||||||||||| || ||||||||| || |||||||| || || |||| |||| Sbjct 2932131 TAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGTC 2932189 Query 190435 AATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCT 190494 |||| |||||||||| || || || ||||| || || || || || ||| || ||| Sbjct 2932190 AATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATCT 2932249 Query 190495 TCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGG 190543 | || || || || ||||| |||| ||||||| | || |||||||| Sbjct 2932250 TTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq3442 Length=4740 Score = 82.4 bits (90), Expect = 1e-10 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 189523 CAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTC 189582 |||||| ||||||| |||||||| || |||||||| || ||||| || || | |||||| Sbjct 4279 CAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTC 4338 Query 189583 CAATATGCATCGTTCAACAACTCCCGTT 189610 |||||||| |||||||| || |||| Sbjct 4339 CAATATGCTAGTTTCAACAATTCTCGTT 4366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633995382024000