Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raphanus_20sativus_20[refseq_20GCF_5F000801105.1_202015-09-29] 10,676 sequences; 426,614,037 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq10676 684 0.0 seq3905 251 8e-62 seq3 179 4e-40 seq2 107 2e-18 seq3442 86.0 7e-12 seq6 82.4 9e-11 >seq10676 Length=153368 Score = 684 bits (758), Expect = 0.0 Identities = 751/996 (75%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| ||| | || ||||||||| | || ||||| ||||| || Sbjct 1326 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1267 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 ||||| || || | ||| | ||||| | ||||||| || ||| |||||||||| Sbjct 1266 ATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1207 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| |||||||| ||| |||| || || | || |||||||| Sbjct 1206 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1147 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || || || ||||| || ||||| |||| || |||||| | || || || || || Sbjct 1146 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTATCCGATC 1087 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 |||||||||||||| ||||||||||||| ||||| ||||||||||| |||| | || Sbjct 1086 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1027 Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931 | ||||| | | || | || || |||||||| |||||||||||| | ||| Sbjct 1026 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 967 Query 160932 CTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGC 160990 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||| | ||| Sbjct 966 CTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 908 Query 160991 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTAT 161050 || ||| | |||| || | |||||||| ||| |||||||||||||| || || || Sbjct 907 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 848 Query 161051 CTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCC 161110 ||||||||| |||||||| ||| |||| |||||||| || |||||||| || |||||||| Sbjct 847 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 788 Query 161111 CTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGG 161170 || |||||||| ||||| |||||||| ||||| || || || || || |||||||| Sbjct 787 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 728 Query 161171 TTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGG 161230 ||| |||| |||||| || | | |||||||| || || || || || | || Sbjct 727 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 668 Query 161231 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGG 161290 |||| || |||||||||||||| || |||||||| || |||||||| ||||| || || Sbjct 667 GTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 608 Query 161291 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 || ||||||||||||| ||| |||||||| || ||||| || || |||||| | || Sbjct 607 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 548 Query 161351 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAA 161410 || ||||| || || ||||| ||||| ||||| | ||| | || ||||| ||||| Sbjct 547 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 488 Query 161411 CCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 161470 ||| || || ||||| |||||||| || | | ||| |||| || || | || || Sbjct 487 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 428 Query 161471 CTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGC 161530 |||||||| || | || ||||||||||||||||||||||| ||||| || |||||||| Sbjct 427 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 368 Query 161531 TCACAACTTCCCTCTGGATCTCGCTGCTGCTGAGTC 161566 ||||||||||||||| || || ||||||| |||||| Sbjct 367 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGTC 332 Score = 529 bits (586), Expect = 2e-145 Identities = 712/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 32010 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32069 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 32070 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC- 32128 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| ||||| | || || || || || || |||||| || Sbjct 32129 --TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 32186 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 32187 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 32246 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | || || || ||||||||||| || ||||||| ||||||| | || Sbjct 32247 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATA 32306 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 ||||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 32307 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 32366 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || || ||||||||||| |||||||| ||||| || || || || || || || || Sbjct 32367 ATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGT 32426 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 32427 CAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTC 32486 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGC 164453 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 32487 TTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGT 32546 Query 164454 ATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTT 164513 | || || | ||||| | || ||||||||||||||||| ||||| |||||||| ||| Sbjct 32547 GTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTT 32606 Query 164514 GAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACT 164573 ||||||||||| ||||||| ||| || || | || ||||||| ||||| ||| Sbjct 32607 GAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACT 32666 Query 164574 TACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAAT 164633 || || |||||||| || |||||||| ||||| || || ||||| ||||||| |||| Sbjct 32667 TATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAAT 32726 Query 164634 AAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCT 164693 || |||||||| || ||||||||| | ||||| || || | || | |||| ||| || Sbjct 32727 AAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCT 32786 Query 164694 ATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATT 164753 |||| | ||||||| || | || || ||||| ||||| || || || ||||| || Sbjct 32787 CTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 32846 Query 164754 AGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAA 164813 | ||||| || ||||| ||||||||||| |||||||| || || || || | || ||| Sbjct 32847 CGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAA 32906 Query 164814 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAG 164873 || | || || |||||||| | ||| ||||| || ||| || |||| || ||| Sbjct 32907 GGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 32966 Query 164874 GAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| || | || ||||| || ||| Sbjct 32967 GAGGTTCTACCACGTGGAAACGCTCTTTAA 32996 >seq3905 Length=4339 Score = 251 bits (278), Expect = 8e-62 Identities = 304/414 (73%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 164172 CTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAG 164231 || ||||||||||| || ||||||| ||||||| | || ||||| ||| | || || Sbjct 1156 CTGTGGGCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAA 1215 Query 164232 TTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCG 164291 |||||| |||| || ||| | || || || ||||| || || |||| |||||| Sbjct 1216 TTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTTTGGTCCA 1275 Query 164292 ATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTT 164351 |||||||| ||||| || || || || || || || || |||||| ||||||||||| Sbjct 1276 ATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTT 1335 Query 164352 GCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCAT 164411 || || ||||| || |||| || || ||||| || | || ||||||| || ||| Sbjct 1336 GCGCCTAGTTTTGGTGTAGCGGTTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCAT 1395 Query 164412 AACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTT 164471 || |||| | | ||||| || ||||||||||| || || || | || || | ||||| Sbjct 1396 AATTGGATATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTG 1455 Query 164472 CTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCA 164531 | || ||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct 1456 TTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCA 1515 Query 164532 AATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTC 164585 ||||| ||| || || | | ||||||| ||||| ||||| || |||||| Sbjct 1516 AATACATTCCGTGCTTTTAACCTAACTCAAGCCGAAGAAACTTATTCAATGGTC 1569 >seq3 Length=29132933 Score = 179 bits (198), Expect = 4e-40 Identities = 360/530 (68%), Gaps = 8/530 (2%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || |||||||| ||||| ||||||||||| || | || ||||| ||| ||| | | Sbjct 2931774 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCTCT 2931833 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 2931834 TTGGGGGGTTGGTTCACAGGTACAACTTTTGTAACTTCATGGTATACTCATGGATTGGC- 2931892 Query 164037 TCTAGTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGAT 164093 ||||| | | || ||| | | | | || | || || || || |||||| || Sbjct 2931893 --TAGTTCCTATTTAGAAGGTTGCAGTCTTTTAACCGATGCAGTTTCTACTCCTGCTAAT 2931950 Query 164094 GCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGG 164153 | | |||||| || || | || ||||||||| | || || || || | | | Sbjct 2931951 AGTTTAACGCATTCT-TTGTTATTATTGTGGGTCCTGAAGCACAAGGAGATTTTAGTCGT 2932009 Query 164154 TGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATC 164213 ||||| ||| | | || || |||| |||||| || ||||| | |||||| | || Sbjct 2932010 TGGTGTCAATTAGACGGTCTGTGGGGTTTTGTTGCTCTCCACAGTGCTTTCGAATTAATA 2932069 Query 164214 GGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCT 164273 |||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 2932070 AGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCA 2932129 Query 164274 ATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGG 164333 || | ||||||||||| |||||||| ||| | || || || || || |||| || Sbjct 2932130 ATAACATTCTCTGGTCCAATTGCTGTTTTTATTTCTGTCTTTCTAATTTATCCTC-AGGT 2932188 Query 164334 CAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTG 164393 |||||| ||||||||||||| || ||||| || ||||| || || | ||| || | Sbjct 2932189 CAATCTGGTTGGTTCTTTGCACCTAGTTTTGGTGTAGCGGCTATATTTCGGTTCATCATC 2932248 Query 164394 TTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGG 164443 || ||||||| || ||||| |||| | | ||||| | ||||||||||| Sbjct 2932249 TTTTTCCAAGGGTTTCATAATTGGAAATTGAACCCTCTTCATATGATGGG 2932298 >seq2 Length=43799612 Score = 107 bits (118), Expect = 2e-18 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 160606 TTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCT 160665 ||| | | || ||||| ||||| ||||||||| | | ||| | | | |||| | Sbjct 8463547 TTTTCATTGGATGGTTTGGTGTTTTGATGATCCTTATCTTATTGACCGTAGTT-TCTGTT 8463605 Query 160666 TT-ATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 || |||| || ||| |||||| ||| || || || | || ||||| ||||||| || Sbjct 8463606 TTTATTATCGCATTCATTGCTGTTCCTCCAGTAGATTTTGATGGTATTTGTGAACCTATT 8463665 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 || | || || | ||||||||| | || || || ||||| || ||| | |||| Sbjct 8463666 TCTCGATCTCTTCTTTATGGAAACGATATTATTTCAGGTGCCATTATTCATACTTCTGCA 8463725 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || |||||| | || || || | | ||||||||||||| | ||||||||||||| ||| Sbjct 8463726 GCTATTGGTTTGCATTTTTATTCAAACTGGGAAGCTGCATTTGTTGATGAATGGCTATAC 8463785 Query 160845 AAT 160847 ||| Sbjct 8463786 AAT 8463788 >seq3442 Length=4740 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 161242 GTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCT 161301 |||||||| |||| || |||||||| || |||||||| ||||| || || || |||||| Sbjct 4277 GTCAAGAAAAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCT 4336 Query 161302 TCCAATACGCTTCCTTCAACAACTCCCGTT 161331 ||||||| ||| |||||||| || |||| Sbjct 4337 TCCAATATGCTAGTTTCAACAATTCTCGTT 4366 >seq6 Length=53636577 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 50096 ATTTTGGATGCTGCAGAAGAACAAGGCGTAGACATCAATTATTCTTGTCGTGCAGGAGCA 50155 || ||||||||||| |||||| || || ||| | ||| ||||| | || || || Sbjct 43943723 ATATTGGATGCTGCTGAAGAAGCTGGAGTTGACTTGCCTTACTCTTGCAGAGCCGGTGCC 43943664 Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 |||||| | || || ||||| ||| | ||| ||||||||| ||| || ||| Sbjct 43943663 TGTTCCACCTGCGCCGGTAAGATCGAGAAAGGTCAAGTTGACCAGTCTGATGGTTCGTTT 43943604 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCT 50263 ||||| ||| |||| |||| |||| ||||||||| ||||| ||| Sbjct 43943603 CTTGAGGATCATCACTTTGAGAAAGGTTATGTCTTGACTTGTGTGGCT 43943556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559253357678400