Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq978 306 6e-81 seq975 221 2e-55 seq945 181 2e-43 seq937 161 1e-37 seq744 147 3e-33 seq562 75.2 2e-11 >seq978 Length=8767375 Score = 306 bits (338), Expect = 6e-81 Identities = 214/241 (89%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||| ||||||||| |||||| ||| ||||| |||||||||||||| | Sbjct 2103526 GTACAAAGGGTAGGGATGTAGTCAACACGAGCT-GATAACTCGTGCTTACTAGGAATT-C 2103469 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2103468 CTAGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2103409 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||| |||||| |||||| ||||||||| Sbjct 2103408 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGCATACATTCGTGTAGTGCGCGTGCGA 2103349 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 || |||| || ||||||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct 2103348 CCTAGAATATTTAAGGGCATCATGGACCTATTATTTCTCAAAACTTCCATGGCCTAAAAG 2103289 Query 241 G 241 | Sbjct 2103288 G 2103288 >seq975 Length=2350911 Score = 221 bits (244), Expect = 2e-55 Identities = 176/209 (84%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| || | ||||||| | ||||||||| ||||||| ||||||||| |||| | Sbjct 138342 GTACAAAAGGAAAGGACGTAATTGACGCGAGCT-GATGACTTACGCTTACTAAAAATT-C 138399 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 138400 CTCGTTGAAAACCAATAATTGCAATGATCCATCCCCATCACGATGAGATTTCAAAGATTA 138459 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | || | | || ||||||| ||||||| ||||||| | ||||| |||| ||| ||||| Sbjct 138460 CTCGAGCTTATCAGCCAAGGCTATAGACTTGTTGAATGCTTCAGTATAGCACGCATGCGG 138519 Query 181 CCCAGAACATCTAAGGGCATCACAGACCT 209 | || |||||||||||||||||||| ||| Sbjct 138520 CTCAAAACATCTAAGGGCATCACAGGCCT 138548 >seq945 Length=13627481 Score = 181 bits (200), Expect = 2e-43 Identities = 116/124 (94%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 9455508 AGCTT-ATGACTCGCGCTTACTAGGAATT-CCTCGTTGAAGACCAACAATTGCAATGATC 9455565 Query 90 TATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 |||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||| Sbjct 9455566 TATCTCCATCACGATGAAATTTCAAAGATTACCCGAGCCTCTCGGCCAAGGCTATAGACT 9455625 Query 150 CGTT 153 |||| Sbjct 9455626 CGTT 9455629 >seq937 Length=9237706 Score = 161 bits (178), Expect = 1e-37 Identities = 142/174 (82%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 23 CAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGC 82 ||||||||||| |||||||| ||||| || ||||| |||| ||||||| || |||||| Sbjct 6225058 CAACGCGAGCT-GATGACTCACGCTTGCTCAGAATT-CCTCATTGAAGATCAGCAATTGT 6225115 Query 83 AATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTG 142 ||||||||||| | || | |||||| |||||||||||||||| |||||||||||| Sbjct 6225116 AATGATCTATCTCTATTAAGATGAAGTTTCAAAGATTACCCGATATTGTCGGCCAAGGCT 6225175 Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 |||||||||||| |||||| | |||| | |||| ||||| ||||| ||||| Sbjct 6225176 ATAGACTCGTTGGATACAT---TCTAGCACAAGTGCAGCCCAAAACATGTAAGG 6225226 >seq744 Length=27178 Score = 147 bits (162), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 |||| |||||||||||||||||||||| |||| ||||||||| |||| ||||||||||| Sbjct 10763 AAGGCTATAGACTCGTTGAATACATCAGCGTAGYGCGCGTGCGCCCCATAACATCTAAGG 10822 Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||| ||||||||| ||||||||| | ||||||||| ||| | |||||| || Sbjct 10823 GCATCACAGACTTGTTATTGCATCAAACTTCTGCGGCCTAAAAAGCCGTAGTCCCTCTAA 10882 >seq562 Length=5960891 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 39 ACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGA--TCTATCCCC 96 |||| ||||||||| |||||| || ||||||||||| || ||||| | |||| ||| Sbjct 3776990 ACTCATGCTTACTAGTAATTTCTTC-TTGAAGACCAATAACTGCAACTATCTCTACCCCT 3777048 Query 97 ATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCC 136 | || ||||||||| |||||| || ||| |||| |||| Sbjct 3777049 AGCAAAATGAAATTTGAAAGATAACAGGGATCTGTTGGCC 3777088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751992867985