Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq562 91.5 8e-17 seq142 87.8 1e-15 seq978 75.2 6e-12 >seq562 Length=5960891 Score = 91.5 bits (100), Expect = 8e-17 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3 ACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGA 62 ||||||| ||||||||||||| ||| ||| | ||||| | |||||| | || Sbjct 5526258 ACCCAAAAACTTTGATTTCTCATAAAGTGGTGGCAGAGTCCTTAAAGCAACATCCGCTGA 5526317 Query 63 TCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| |||||||| |||| |||| |||||| |||||||||| ||| ||||||| Sbjct 5526318 TCCCTTGTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTAATCATCTTCGA 5526372 >seq142 Length=624436 Score = 87.8 bits (96), Expect = 1e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| ||| ||||| | ||||| | || || | Sbjct 250624 GAACCCAAAAACTTTGATTTCTCATAARGTGCCAATGGAGTCTTTAAACCAATATTTGCT 250565 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| | |||||||| ||| ||||||||| || || || Sbjct 250564 GATCCCTAGTCGGCAACGTTTATGACTAAGACTAGGACTGTATCTGATTGTATTTGA 250508 >seq978 Length=8767375 Score = 75.2 bits (82), Expect = 6e-12 Identities = 88/118 (75%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGATAACATCGCC 59 |||| ||| ||||||||||||| ||| |||| | ||||| |||| | || || Sbjct 2097747 AACCYAAAAACTTTGATTTCTCATAAAGTGCYGCTGGAGTCCTTAAATCAAAA--TCCAT 2097690 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| ||| ||||| |||| ||| || ||||||||| ||| ||||||| Sbjct 2097689 TGATCCCTGGTCAGCAC-GTTTATGGTTGAGATTAGAACGGTATCTRATCATCTTCGA 2097633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278397444810