Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq142 168 1e-39 seq959 165 1e-38 seq562 125 1e-26 seq978 100 5e-19 seq945 86.0 1e-14 >seq142 Length=624436 Score = 168 bits (186), Expect = 1e-39 Identities = 188/246 (76%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133 |||||||||| ||| |||||||||||||||| | || |||| | |||||||||||||| Sbjct 250263 TTACTTTGAAGAAACTAGAGTGTTCAAAGCAAGGCTACGCTCTAGATACATTAGCATGGG 250322 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA-ATGATTA 192 |||| | |||||| | | | ||||| |||| | | |||| || ||| ||||||| Sbjct 250323 ATAACAATATAGGATTTT-GATCCTATTCTGTTAGCCTTCAGGATCGGAGTATATGATTA 250381 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | | || | || | || |||||| || |||||||||||||||||||||| ||| Sbjct 250382 ACAAAGAGAATCAGTGGCAGTAGTATTTCATAGTCAGAGGTGAAATTCTTGGATGTATGA 250441 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| ||| ||| || ||| || |||||||||||| ||||||||| ||| |||||| Sbjct 250442 AAGACGAACAACTATGACAGCATTTCCCAAGGATGTTTCCATTAATCA-AGAAGGAAAGT 250500 Query 313 TAGGGG 318 | |||| Sbjct 250501 TGGGGG 250506 >seq959 Length=5381930 Score = 165 bits (182), Expect = 1e-38 Identities = 173/223 (78%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| ||||||| || |||||||||||||||||||| |||| ||| | ||||||||||| Sbjct 3724803 ACTATTACTTTAAAGAAATTAGAGTGTTCAAAGCAAGCCTAATCTCTGGATACATTAGCA 3724862 Query 130 TG-GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 || | | |||| ||||| | |||| ||||| |||||| | || | || |||||| Sbjct 3724863 TGAGTACAATA---TAGGATTT-CGGTCCTATTCTGTTGGCCTTCAGAATCGAAGTAATG 3724918 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| | ||| ||| |||| | |||| || |||| ||||||||||||||||||| Sbjct 3724919 ATTAACAAGGACAGTAAGGGGCATTCATATTTCATAGTCAAAGGTGAAATTCTTGGATTT 3724978 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 || |||| ||| ||||||||||| || ||||||||||||| Sbjct 3724979 ATAAAAGATGAACAACTGCGAAAGCATTTGCCAAGGATGTTTT 3725021 >seq562 Length=5960891 Score = 125 bits (138), Expect = 1e-26 Identities = 101/121 (83%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 196 GGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAG 255 |||||||||||||| | ||| | || |||||||||||||||||||||||||| ||| Sbjct 5526495 GGGATAGTCGGGGGCATTCGTACTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAG 5526436 Query 256 ACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || ||| || || ||||| || |||||||||||||||||||||| ||||||||||| | Sbjct 5526435 ACGAACAACAGCAAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGG 5526377 Query 316 G 316 | Sbjct 5526376 G 5526376 >seq978 Length=8767375 Score = 100 bits (110), Expect = 5e-19 Identities = 132/181 (73%), Gaps = 9/181 (5%) Strand=Plus/Plus Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||| |||||| | || | ||||||||||| | |||| | ||||||||||| | | Sbjct 2097460 TAGCATAGGATTT-CGCTCTTATTTTGTTGGCCTTCAGGATCAGAGTAATGATTAACATG 2097518 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||||||||| | |||| || ||||||| ||||||| || ||| |||| Sbjct 2097519 GATAGTCGGGGGCATTCTTATTTCATAGTCAGAGTTGAAATTATTTGAT-------AGAC 2097571 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 ||| ||| | ||| | || ||||| |||||| ||||||||| ||| ||||||| ||| Sbjct 2097572 GAACAACTACAAAAACATTTGCCAAGAATGTTTCCATTAATCA-AGAATGAAAGTTGGGG 2097630 Query 318 G 318 | Sbjct 2097631 G 2097631 >seq945 Length=13627481 Score = 86.0 bits (94), Expect = 1e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| |||||||||||||||||||| |||| |||| | |||||||||||| Sbjct 6619471 CTGTTACTTTGAAGAAATTAGAGTGTTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 6619412 Query 131 GGAATAATAGAATAGGA 147 || |||| | |||||| Sbjct 6619411 GGGATAACAATATAGGA 6619395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915191040192