Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq952 129 2e-27 seq978 95.1 5e-17 seq142 95.1 5e-17 seq976 93.3 2e-16 >seq952 Length=4048949 Score = 129 bits (142), Expect = 2e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || | | |||||||||| ||||||||||||| ||| | | ||||| ||| Sbjct 2954745 GAGCATACCTATCGAGACCCGAAAGGTGGTGAACTATGCATGAGCGGTGCAAAGCCTGAG 2954804 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||||| ||||| | || ||||||||||| ||||| | ||||||| Sbjct 2954805 GAAACTCTGGTGGAGGCTTGCAGCAATACTAACGTGCAAATCGTTCGTCTGACTTGGGTA 2954864 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 2954865 TAGGGGCGA 2954873 >seq978 Length=8767375 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||| |||||| | | ||||| ||| | | ||| ||||||||| || || ||||||| Sbjct 2104571 GAGCCGAGTTTTCTAGGAATATAGCCCCAGTCGGGCAGTAAATTTCATCCAAGGCTAAAT 2104630 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| | ||| |||||| ||||||| | || |||||||| |||| |||||| || Sbjct 2104631 ACGGGCAAAAGATTGATAGCAAACAAGTACCGCGAGGGAAAGATG-AAAGGACTTTGAAA 2104689 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| |||||| | || |||| | | ||| ||||| Sbjct 2104690 AGAGAGTCAAAAAGTGCTTG-AATTRTCGGGAGGAAAGCG 2104728 Score = 95.1 bits (104), Expect = 5e-17 Identities = 190/273 (70%), Gaps = 13/273 (5%) Strand=Plus/Plus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCG 469 |||||| |||| ||||||||| | |||||| | ||||||| |||| |||| || Sbjct 2104954 GTCTTGAAACA-GGACCAAGGTATTTAACATGTGTGCGAGTCGACAGGTGAGTAAACTCG 2105012 Query 470 TGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAG-GGTGCACCATCGACCGAT 526 | | |||| ||| | | || | || |||| |||| |||||||| | ||| || Sbjct 2105013 TAATGTGTAAGGAAGCTAATTGGCAG---GATCCCGCTGAGAGGTGCACCGTTGACTGAC 2105069 Query 527 CCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGA 586 |||| | | || || || |||| ||||||| | |||| |||| ||||||| Sbjct 2105070 ATTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATATCAA----GACCTGAAA-ATGGTGA 2105124 Query 587 ACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGG 646 ||||||||||| | | ||||||||||||| |||| ||||| || || | | || Sbjct 2105125 ACTATGCCTGAGGAAGCCGAAGCCAGAGGAAGCTCTAGTGGATGCCAAAAGAGATAGTGA 2105184 Query 647 CGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||||||||| | | || | |||||||||||| Sbjct 2105185 CGTGCAAATTGTTTATCTGACTTGGGTATAGGG 2105217 >seq142 Length=624436 Score = 95.1 bits (104), Expect = 5e-17 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||| |||||||||||||| || | ||||||||| ||||| | Sbjct 260731 TCAACGAGTCAGGTTATTTGGGAATGCAGCCACAAGCATGCGGTAAATTTTGTCTAAGAC 260790 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || || |||| | | | ||||||| |||| ||||||| |||| |||| Sbjct 260791 TAAATACAGGTAAGTGACCCACAACAAACAAGTATCGTGAGGGAAAGATAAAAATGACTT 260850 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 || ||||||||| || || | ||||||||| Sbjct 260851 TGCAAAGAGAGTCGAAGAGTGCTTGAAATTGT 260882 >seq976 Length=16402300 Score = 93.3 bits (102), Expect = 2e-16 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTAT-GCCTGAATAG 601 || || |||| ||||||| |||| | |||| ||||||||||||||||| |||||| || Sbjct 8152073 GGGTTCGAGTGTGAGCATACCTGTCGAGACCTGAAAGATGGTGAACTATGGCCTGAGCAG 8152014 Query 602 GGTGAAGCCAGAGGAAACTCTGG 624 || |||||||||||||||||||| Sbjct 8152013 GGCGAAGCCAGAGGAAACTCTGG 8151991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079979000450