Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq397 152 7e-35 seq976 132 7e-29 seq851 120 4e-25 seq139 116 5e-24 seq619 111 2e-22 seq207 109 8e-22 seq938 98.7 1e-18 seq952 96.9 5e-18 seq413 91.5 2e-16 seq258 89.7 7e-16 seq970 87.8 2e-15 seq142 86.0 9e-15 seq945 82.4 1e-13 seq979 75.2 2e-11 seq950 73.4 5e-11 >seq397 Length=13534 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 7456 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 7398 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 7397 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 7340 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 7339 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 7289 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 7288 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 7229 Query 246 GTA 248 ||| Sbjct 7228 GTA 7226 >seq976 Length=16402300 Score = 132 bits (146), Expect = 7e-29 Identities = 175/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 12164838 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 12164780 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || || ||||| || Sbjct 12164779 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTYCGACCCCCT------------- 12164733 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| | ||| Sbjct 12164732 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTRCCT 12164679 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 12164678 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 12164619 Query 246 GTA 248 ||| Sbjct 12164618 GTA 12164616 >seq851 Length=23697 Score = 120 bits (132), Expect = 4e-25 Identities = 173/243 (71%), Gaps = 21/243 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| | |||| Sbjct 14068 CCTTCCGGCACTGGGCAGGCGTCAGCCCC-ATACATGGTCTTAC-GACTTTGTGGAGACC 14011 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| |||||||||||||| || || |||||||| | Sbjct 14010 TATGTTTTTGGTAAACAGTCGCTTGGGCCTGGTCACTGCGACCCCTT------------- 13964 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 13963 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCT 13910 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||| ||| | Sbjct 13909 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGATTTCGG 13850 Query 246 GTA 248 ||| Sbjct 13849 GTA 13847 >seq139 Length=5950 Score = 116 bits (128), Expect = 5e-24 Identities = 168/237 (71%), Gaps = 20/237 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| | |||||| | |||| | ||| || |||| Sbjct 3487 CCTTCCAGCACTGGGCAGGCGTCAGCCTCCATACATGGTCTTAG-GACTTTGCCGAGACC 3429 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||| |||||| || || |||||||| | Sbjct 3428 TGTGTTTTTGCTAAATAGTCGCCCGGGCCTGGTCACTGCGACC---------------CT 3384 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||| ||| |||||||||| ||||| Sbjct 3383 T--TTTGTGAGGAG--GCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCT 3328 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 3327 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 3271 >seq619 Length=11537 Score = 111 bits (122), Expect = 2e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 1371 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 1312 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 1311 CGCGCCCCTARGTATTCTCTACCTACCCACCTGTGTCCGTTTCAGGTA 1264 >seq207 Length=565375 Score = 109 bits (120), Expect = 8e-22 Identities = 169/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||| || |||| || ||| || | ||||| | ||| || || | Sbjct 214411 CCTTCCGGCACTGGGCAAGCATCAGCCCCCATAGATAGTCTTAC-GACTTTGCGAAGATC 214469 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 214470 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 214516 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||| ||||||||||||||||||||||| |||||||||| ||||| Sbjct 214517 TTGTG----AGGAG--GCATCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 214570 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | | | || ||||||||||||| |||||||||||| ||| | Sbjct 214571 TAGAGAGAGTTGTCTCRYGCCYCTAGGTATTCTCTACCTACCCACCTGTGTCGATTTCGG 214630 Query 246 GTA 248 ||| Sbjct 214631 GTA 214633 >seq938 Length=6919174 Score = 98.7 bits (108), Expect = 1e-18 Identities = 89/110 (81%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||| ||| |||||||||| ||||||| | |||| | Sbjct 6768348 GGCACCCCTTCTCCCGAAGTTACGAGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 6768407 Query 201 CGAACG--CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||| ||| ||||||||||||| |||||| ||||||||| |||| Sbjct 6768408 C--ACGTCCCTAGGTATTCTCTACCTACCCACCTATGTCGGTTTCGGGTA 6768455 >seq952 Length=4048949 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||| |||| |||||| ||| ||||||| | |||| | Sbjct 2831252 GGCACCCCTTCTCCCGAAGTTACAGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTTGTCT 2831311 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| ||||| ||||| |||| |||| Sbjct 2831312 CGTGCCCCTAGGTATTCTCTACCTACCCACCCGTGTCAGTTTCAGGTA 2831359 >seq413 Length=711310 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||| ||| ||||||| ||||| |||||||| | |||||| | |||| | Sbjct 704032 GGCACCCCTTTTCCTGAAGTTATGGGGCTATTTTGCCAAGTTCCTTTGAGAGAGTTGTCT 703973 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || ||| ||||||||||||| |||||||||||||||| |||| Sbjct 703972 CACACTCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTTGGGTA 703925 >seq258 Length=1454245 Score = 89.7 bits (98), Expect = 7e-16 Identities = 128/182 (70%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 1357529 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 1357587 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | | Sbjct 1357588 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC-------------CCCT 1357634 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | | |||||||||||||| ||||||||| ||| |||||| ||| ||||| Sbjct 1357635 TTGT------GAGGAGGCACCCCTTCTCCTGAAGTTACGAGGCTATTTTGTCGAGTTCCT 1357688 Query 186 TA 187 || Sbjct 1357689 TA 1357690 >seq970 Length=9310200 Score = 87.8 bits (96), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| |||||||| ||| ||||||| || || |||| | |||| | Sbjct 9264553 GGCACCCCTTCTCCCAAAGTTACGAGGCTATTTTGCAGAGTTTCTTAGAGAGAGTTGTCT 9264612 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||| ||||| |||||||||||||||| ||||| Sbjct 9264613 CACGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGGTTT-CGGTA 9264659 Score = 84.2 bits (92), Expect = 3e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||| | || |||| ||||||||| |||||| ||| ||||||| | |||| | Sbjct 9274888 GGCACCCCGTTTCTCGAAATTACGGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTTGTCT 9274829 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | | ||| ||||||||||||| ||| ||||||||||||| || Sbjct 9274828 CACGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCGGTTTAGGG 9274783 >seq142 Length=624436 Score = 86.0 bits (94), Expect = 9e-15 Identities = 159/231 (69%), Gaps = 23/231 (10%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 368749 CCTTTCGACACTGGGCAGGCGTCAGACCCCATACATGGTCTTAC-GACTTTGCGAAGACC 368807 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||| |||||||||||| || | || ||||| || Sbjct 368808 TGTGTTTTG-GTAAACAGTCGCCCAGGCCTGGTTACTACGACCCCCT------------- 368853 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||| ||||||| ||||| ||||| |||| ||||| Sbjct 368854 TTGTG----AGGAG--GCACCCCTTCTCCTGAAGTTATGGGGCTATTTTCCCGAGTTCCT 368907 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 || | |||| | || | ||| ||||||||||||| |||||| ||| Sbjct 368908 TA--GAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTATGT 368956 >seq945 Length=13627481 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| || ||| |||||||||| || |||||||||| || |||| | |||| | Sbjct 9988756 GGCACCCTTTTTCCTGAAGTTACGGAGCTATTTTGCCGAGTTTCTTAGAGAGAGTTATCT 9988815 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || || ||| ||||||||||||| ||| ||||||| ||| |||| Sbjct 9988816 CGCACCCCTAGGTATTCTCTACCTACTCACTTGTGTCGATTTCGGGTA 9988863 >seq979 Length=5567346 Score = 75.2 bits (82), Expect = 2e-11 Identities = 60/71 (85%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 17 CGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAG 76 |||||||||||||| || ||||||| | ||||| | ||| ||| ||||||||||||| | Sbjct 4223171 CGGGCAGGCGTCAGCCCCTATACATGGTCTTAC-GACTTTGCAAAGACCTGTGTTTTTGG 4223113 Query 77 TAAACAGTCGC 87 |||||||| || Sbjct 4223112 TAAACAGTTGC 4223102 >seq950 Length=8950308 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| || |||||||||| || |||||| | ||||| | ||| ||| |||| Sbjct 5317756 CCTTCCGGCACTGGACAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACC 5317814 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| ||||||| |||| Sbjct 5317815 TGTGTTTTTGGTAAACAATCGC 5317836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694393414267