Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq744 224 2e-56 seq978 167 4e-39 seq966 140 5e-31 seq142 129 9e-28 seq217 84.2 3e-14 >seq744 Length=27178 Score = 224 bits (248), Expect = 2e-56 Identities = 207/264 (78%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||| |||| ||||||||| |||| ||||||||||||||||||||| Sbjct 10773 ACTCGTTGAATACATCAGCGTAGYGCGCGTGCGCCCCATAACATCTAAGGGCATCACAGA 10832 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | ||||||||| ||||||||| | || || | ||||||||||||||| | Sbjct 10833 CTTGTTATTGCATCAAACTTCTGCGGCCTAAAAAGCCGTAGTCCCTCTAAGAACTCTAGT 10892 Query 122 ACCAA-------CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 ||| || ||| | |||| |||||||| | ||||||| ||| ||| | Sbjct 10893 TGCAAGGGGATTCCTCAGTATA----GCTAGTTAGCAGGCTGAGGTCTCATTCATTAACR 10948 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||||| Sbjct 10949 GAATTAACCAGATAAATCGCTCCACCAACTAAGAATGGCCATGCACCACCACGCATAGAA 11008 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||||||| Sbjct 11009 TCAAGAAAGAGCTCTCAATCTGTC 11032 >seq978 Length=8767375 Score = 167 bits (184), Expect = 4e-39 Identities = 178/235 (76%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 |||||| ||||||||| || |||| || ||||||||||| ||||| ||||| | ||| Sbjct 2103365 GTGTAGTGCGCGTGCGACCTAGAATATTTAAGGGCATCATGGACCTATTATTTCTCAAAA 2103306 Query 79 CTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA------CCATAG 132 ||||||| | || ||| ||||||||||||||| ||| || || || Sbjct 2103305 CTTCCATGGCCTAAAAGGTCGCAGTCCCTCTAAGAAGTTAGCTGTGAAAGGATTCCTCAG 2103246 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | |||| |||| ||| || |||||| | ||||| ||||||| ||||||||||| Sbjct 2103245 CATA----GCTAGTTAGTAGGCTAGGGTCTCATGCGTTAACGGAATTGACCAGACAAATT 2103190 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 2103189 TGTCCACCAACTAAGAGCAACCATGCACCACCACCCACAGAATCAAGAAAGAGCT 2103135 >seq966 Length=1498237 Score = 140 bits (154), Expect = 5e-31 Identities = 100/114 (88%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| ||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||| Sbjct 1249464 GCTAGTTAGCAGGTTAAGGTCTCGTTTGTTAATGGAATTAACAAGACAAATCGCTCCACC 1249523 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||| || |||| |||||||| ||||||||||||||||||| ||| || Sbjct 1249524 -ACTAAGAATGGACATGGACCACCACTGATAGAATCAAGAAAGAGCTCTCAGTC 1249576 >seq142 Length=624436 Score = 129 bits (142), Expect = 9e-28 Identities = 95/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | ||||||| ||| ||| | |||||||||||||| || ||||||| Sbjct 257181 GCTAGTTAGCAAGCTGAGGTCTCATTCATTAATGAAATTAACCAGACAAGTCGCTCCACC 257122 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 ||||||||| ||||||||||||||| ||||||||||||||||||| ||| Sbjct 257121 TACTAAGAACAACCATGCACCACCACCTATAGAATCAAGAAAGAGCTCTCA 257071 >seq217 Length=613971 Score = 84.2 bits (92), Expect = 3e-14 Identities = 67/82 (82%), Gaps = 8/82 (10%) Strand=Plus/Plus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||| ||||||||| |||||||| |||||| || | ||||||||||||||||| Sbjct 135815 TATAGGAATTAACTAGACAAATTGCTCCAC--------AATGCCCATGCACCACCACCCA 135866 Query 230 TAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||| ||| Sbjct 135867 TAGAATCAAGAAAGAGCTCTCA 135888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796792443099