Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq940 178 3e-42 seq970 159 7e-37 seq851 150 4e-34 seq292 145 1e-32 seq946 138 2e-30 seq619 138 2e-30 seq207 138 2e-30 seq941 132 9e-29 seq952 123 5e-26 seq397 111 3e-22 seq558 86.0 1e-14 seq964 75.2 2e-11 seq228 73.4 8e-11 >seq940 Length=8971605 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| |||||| |||||||||| ||||||||||| Sbjct 5666863 GGGACAGTCTCAGGTAGACAGTTTTTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGC 5666922 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 5666923 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 5666981 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 5666982 GCTTGACTGCAAGACCCACCBGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 5667041 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 5667042 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 5667091 >seq970 Length=9310200 Score = 159 bits (176), Expect = 7e-37 Identities = 178/232 (77%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 9264060 GGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCA 9264001 Query 172 CCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 ||||| | |||| ||| ||| | ||| || || | |||||||||||| |||| Sbjct 9264000 TGCAAAGGTTTCCTCGAGCC-GGACGAAAAT--TG-GCCCTTGAGTGCAAAGGCAGAAGG 9263945 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | |||| | || |||||||||||||||||| |||| |||||| | Sbjct 9263944 GAGCTTGACTGCAAGACCCACCCGTTGAGCAGGGACGAAAGTCGGCCTTAGTGATCCAAC 9263885 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| |||||||||| | ||||||||||||| || |||||| Sbjct 9263884 GGTGCCGAGTGGAAGGGCCGTCGCTTAATGGATAAAAGCTACTCTAGGGATA 9263833 >seq851 Length=23697 Score = 150 bits (166), Expect = 4e-34 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 14447 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 14506 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | ||||| ||| | | | || | | |||||||||||| ||||| Sbjct 14507 GTGCAAAGGTTTTCTCAGGCCGGACGAAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 14565 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | || ||| |||||||| |||||||| ||| ||||||| ||| Sbjct 14566 GCTTGACTGCAAGATCCATCCGTCGAGCAGGGATGAAAGTCGACTTTAGTGATCCGACGG 14625 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||| ||||||| ||||||||||| ||| || |||||| Sbjct 14626 TGCCGAGTGGAAGGGCTGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 14675 >seq292 Length=1602195 Score = 145 bits (160), Expect = 1e-32 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | || ||| || |||| |||||||||| |||| | ||| Sbjct 1501475 GGGACAGTCTCAGGTAGACAATTTCTATGAGGCGTAGGCCTCCCAAAAGGTAATGAAGGA 1501534 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | ||||||||| | || || | ||||||||| | |||| Sbjct 1501535 GTGCAAAGGTTTCCTCGGGTTGGATGGAGAT--TG-GCCCTTGAGTGCAAAGATAGAAGG 1501591 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| | Sbjct 1501592 GAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGAC 1501651 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| || ||| ||| |||||||||| ||| || |||||| Sbjct 1501652 GGTGCCGAGTGGAAGGGTTGTCACTCAACGGATAAAATTTACTCTAGGGATA 1501703 >seq946 Length=5553863 Score = 138 bits (152), Expect = 2e-30 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| ||||| | |||||| |||||| ||||||||| ||||||||||| Sbjct 2113981 GGGACAGTCTCAGTTAGACAGTTTCTATGGGGCATAGACCTCCCAAAAGGTAACGGAGGC 2113922 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 ||||| | ||||| ||||| || | | |||||||||||| ||||| | Sbjct 2113921 ATGCAAAGGTTTCCTCAAGTTGGACAGAGATTGACCCTTGAGTGCAAAGGCAGAAGGGAG 2113862 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | | | |||||||| |||||||| |||| |||| || |||| Sbjct 2113861 CTTGACTGCAAGACCCACCTGGCGAGCAGGGATGAAAGTCGACCTTAGTGATTCGACGGT 2113802 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || || ||||| ||| ||||||| || ||||||| ||| || ||| || Sbjct 2113801 GCCGAGTGGAAAGGCTGTCGCTCAACAGATAAAACTTACTCTAGGGCTA 2113753 >seq619 Length=11537 Score = 138 bits (152), Expect = 2e-30 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||| |||| Sbjct 1865 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACAAAGGC 1924 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | | | ||| | ||| | | |||||||||||| |||| Sbjct 1925 GTGCAAAGGTTTCCTCGGGCCGAACGGAGAT--TGCCCTCGAGTGCAAAGGCAGAAGGAA 1982 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | || ||| |||||||| |||||||| ||| ||||||| | | Sbjct 1983 GCTTGACTGCAAGATCCATCCGTCGAGCAGGGATGAAAGTCGACTTTAGTGATCCGACAG 2042 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||| ||||||| ||||||||||| ||| || |||||| Sbjct 2043 TGCCGAGTGGAAGGGCTGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 2092 >seq207 Length=565375 Score = 138 bits (152), Expect = 2e-30 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | ||||| | ||||| ||||||||| ||||||||||| Sbjct 214032 GGGACAGTCTCAGGTAGATAGTTTCTATAGGGCGTAGACCTCCCAAAAGGTAACGGAGGC 213973 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 213972 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 213914 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || || ||||||||||||| | | || ||||||| || Sbjct 213913 GCTTGACTGCAAGACCCACCCGTTGAGTAGGGACGAAAGTCAGCCATAGTGATCCGATGG 213854 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| |||||| |||| | ||||||||| ||| || |||||| Sbjct 213853 TGCCGAGTGGAAAGGCCGTTGCTCAATGGATAAAAGTTACTCTAGGGATA 213804 Score = 125 bits (138), Expect = 1e-26 Identities = 168/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAG-TCG--GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGA 167 |||||||| |||| | | | |||||| |||||| ||||| ||| ||| | || Sbjct 131514 GGGACAGTCTCAGGTAGTAGACAGTTTCTATGGGGCATAGACCTCCAAAAAGGTAGCAGA 131455 Query 168 GGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGG 227 ||| ||||| | |||||| ||| ||| | | |||||||| ||| |||| Sbjct 131454 GGCATGCAAAGGTTTCCTCAGGCCGGACGGAGATTGGTCCTCGAGTGCAAAAGCAGAAGG 131395 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | ||| | ||| |||||||||||||||||| |||| ||||| Sbjct 131394 GAGCTTGACTGCAAGACCHACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCTAAT 131335 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| ||||| ||||||||||| | ||||||||| ||| || |||||| Sbjct 131334 GTTGCTGAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 131283 >seq941 Length=10723577 Score = 132 bits (146), Expect = 9e-29 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 || ||||| ||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 2292748 GGKACAGTCTCAAGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 2292689 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||| ||||| Sbjct 2292688 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 2292630 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||| |||||||| |||| ||||||| | | Sbjct 2292629 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATCCGACAG 2292570 Query 290 TGCTGAATGGAACGGCCGTCG 310 ||| || ||||| |||||||| Sbjct 2292569 TGCCGAGTGGAAGGGCCGTCG 2292549 >seq952 Length=4048949 Score = 123 bits (136), Expect = 5e-26 Identities = 158/213 (74%), Gaps = 10/213 (5%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| |||||| |||||||||| |||||||||| | ||||| | || | | Sbjct 2830748 CAGTTTCTATGGGGCATAGGCCTCCCAAAAGGTAACGGAGGGGTGCAAAGGTTTCC-CGG 2830690 Query 189 CTTGGATGGA----AACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | || | ||| |||| | || |||||||||||| ||| | | |||||||| | || Sbjct 2830689 CCTG-ACGGAGATTAACCCT-CG---AGTGCAAAGGCAGAAGAGAGCTTGACTGCAAGAC 2830635 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || | | ||||||||||| ||| || |||| ||||||| ||||||||| ||||| || Sbjct 2830634 CCACCCATTGAGCAGGGACGATAGTTGGCCTTAGTGATCCGACGGTGCTGAGTGGAAGGG 2830575 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGA 337 | || |||| | ||||||||| ||| || |||| Sbjct 2830574 CTGTTGCTCAATGGATAAAAGTTACTCTAGGGA 2830542 >seq397 Length=13534 Score = 111 bits (122), Expect = 3e-22 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 |||||||||| || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 7812 CGGGACAGTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 7871 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | ||||| || |||| ||| || | || || | || || | ||| Sbjct 7872 TGTGCAAAGGTAGGCTCAAGCTAATATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 7926 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 7927 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 7986 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 7987 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 8037 >seq558 Length=4929555 Score = 86.0 bits (94), Expect = 1e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 ||| ||||||||||||| |||| ||||||| |||||| | ||||| |||| || ||| | Sbjct 213011 GCAAGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCAAGTGGAAGGGCCATCRCTCAA 213070 Query 316 CGGATAAAAGCTACCCTGGGGATA 339 ||||||||| ||| || |||||| Sbjct 213071 TGGATAAAAGTTACTCTAGGGATA 213094 >seq964 Length=1826015 Score = 75.2 bits (82), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||| ||| ||||| | |||||||| | ||| | ||| || | ||| ||||||| Sbjct 998471 AGTGCAAACGCAGAAGGG-GCTTGACTGCAAGACCACCC-GTCAAGTAAGGATGAAAGTC 998414 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTA 328 || ||| |||| | || ||||| || || |||| ||| || ||||||||||| || Sbjct 998413 GGTTTTAGTGATTTGATGGGGCTGAGTGAAAGGGCCATCGTTCAACGGATAAAAGTTA 998356 >seq228 Length=118318 Score = 73.4 bits (80), Expect = 8e-11 Identities = 125/177 (71%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||| |||| ||||| ||||| |||| | |||| | ||||| || | || | Sbjct 51028 GCCTCCGAAAG-GTAACAGAGGCAAGTAAAGGTTTCCTCGGGCTGGATAGAGAT--TG-G 51083 Query 208 CAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264 | | |||||||||||| ||| | | |||| ||| | | || | || || ||||| | Sbjct 51084 CCCTTGAGTGCAAAGGCAGAAGAGAGCTTGATTGCAAGAGCCACCTGTTGAGTAGGGATG 51143 Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATA 321 |||||| | |||| ||||||| |||| | ||||| || ||||||| | ||||| Sbjct 51144 AAAGTCTGCCTTAGTGATCCGATAGTGCCAAGTGGAAGGGTCGTCGCTTAATGGATA 51200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982390382304