Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq397 107 2e-21 seq619 98.7 1e-18 seq207 96.9 4e-18 seq941 95.1 1e-17 seq970 93.3 5e-17 seq976 89.7 6e-16 seq292 86.0 7e-15 seq851 84.2 2e-14 seq952 78.8 1e-12 seq940 77.0 4e-12 >seq397 Length=13534 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 7667 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 7608 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 7607 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 7548 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 7547 GACAAGGAATTTCGCTACCTTAGGACAGTTA 7517 >seq619 Length=11537 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 1705 GGGTCTTTCTATCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 1646 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||| ||||||||||| Sbjct 1645 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCCG 1587 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 1586 ACAAGGAATTTCGCTACCTTAGGACCGTTA 1557 >seq207 Length=565375 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214280 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 214339 Query 173 A 173 | Sbjct 214340 A 214340 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||| ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 131762 TACGCCTTTTGTGCGAGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTGGGACCATT 131821 Query 173 A 173 | Sbjct 131822 A 131822 >seq941 Length=10723577 Score = 95.1 bits (104), Expect = 1e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2293000 CCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 2293056 >seq970 Length=9310200 Score = 93.3 bits (102), Expect = 5e-17 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG-CTCACGGTTGAGACAGNNNN 104 |||| || |||||||||| || | | ||||||| ||| ||| | ||||||| Sbjct 9264241 GGTAGTCCGCATCTTCACAGACATGTCTATTTCACGGAGTCTCTCCCC-GAGACAGTGCC 9264299 Query 105 NNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 164 ||| || ||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct 9264300 CAGATTGTTACGCCTTTCGTGCAGGTCGAAACTTACCCAACAAGGGATTTCGCTACCTTA 9264359 Query 165 GGACCGTTA 173 ||||||||| Sbjct 9264360 GGACCGTTA 9264368 >seq976 Length=16402300 Score = 89.7 bits (98), Expect = 6e-16 Identities = 106/145 (73%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| ||| | | |||| || |||||||||| || | | ||||||||||| Sbjct 12165057 GGGTCTTTCTATCCAAGTGTAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACTGAG 12164998 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||| ||| ||||||||||||||| Sbjct 12164997 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCATGCGGGTCGGAACTTACCCA 12164939 Query 144 ACAAGGAATTTCGCTACCTTAGGAC 168 ||||||||||||||||||||||||| Sbjct 12164938 ACAAGGAATTTCGCTACCTTAGGAC 12164914 >seq292 Length=1602195 Score = 86.0 bits (94), Expect = 7e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 689444 CCTTTCATGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCATTA 689388 >seq851 Length=23697 Score = 84.2 bits (92), Expect = 2e-14 Identities = 107/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||| || | | ||||||| ||| Sbjct 14287 GGGTCTTTYTGTCCARGTGCAGGTAGTCCACATCTTCATAGAAATGTCTATTTCACCGAG 14228 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| ||||| ||||||| | Sbjct 14227 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGAAACTTACTAG 14169 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||| ||||||||||||||||||||||| Sbjct 14168 ACAAGGCATTTCGCTACCTTAGGACCGTTA 14139 >seq952 Length=4048949 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| ||||||| || |||||| ||||||||||||||||||||||||||| Sbjct 2831006 TACGCCTTTCATGCTGGTCGGAGCTCACCCGATAAGGAATTTCGCTACCTTAGGACCGTT 2831065 Query 173 A 173 | Sbjct 2831066 A 2831066 >seq940 Length=8971605 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || ||||||| ||||| |||||| |||||||||||||| ||||||||||||||||| Sbjct 212807 CCTTTCGTGCGGGTCGYAACTTATTCGACAAGGAATTTCACTACCTTAGGACCGTTA 212751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194810321