Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq638 123 2e-26 seq978 109 5e-22 seq338 107 2e-21 seq207 93.3 4e-17 seq963 86.0 5e-15 seq976 77.0 3e-12 >seq638 Length=7044 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 4376 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 4434 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 4435 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 4494 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 4495 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 4534 >seq978 Length=8767375 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| | || ||||||| |||| || | Sbjct 2062008 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTAGGGTTAGCTCACCCTTGCAG 2061949 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 2061948 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 2061889 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || |||||||||||||| ||||||||||||| || |||| Sbjct 2061888 GATTACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2061849 >seq338 Length=1068613 Score = 107 bits (118), Expect = 2e-21 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||||| ||| ||||| | ||| |||| | ||||| ||||||| Sbjct 545846 CGAGTTGCAGCCTACAATCCGAACTGACGATG-AGTTTTTGGGGT-AGCTCACCCTCGCA 545789 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| | | | |||||| ||||||| |||| |||||||| || Sbjct 545788 GGATCACGACCCTTTATCCCAGCAATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 545729 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 ||| ||||| || |||||| ||||||||||||| || ||| Sbjct 545728 TGATGACTTAACATCATCCTCACCTTCCTCCGGCTTATCA 545689 >seq207 Length=565375 Score = 93.3 bits (102), Expect = 4e-17 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 ||||||||| || ||||||| ||| | ||| ||||||||||| || ||| ||| Sbjct 218793 GAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGGATTAGCTYACCATCGYGGG 218852 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| || | ||| || ||||| ||||||| ||| |||||||| |||| Sbjct 218853 ATCGCGACCATTTGTCCCGGCCGTTGTAGCACGTGTGTCACCCAGGGCATAAGGGGCATG 218912 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCC 151 | ||||| ||||||||| ||||||||||| Sbjct 218913 ATGACTTAACGTCATCCTCACCTTCCTCC 218941 >seq963 Length=513372 Score = 86.0 bits (94), Expect = 5e-15 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||| |||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 325550 CCATTGTAGGACATGTGTTGCCCAAGGCATAAGGGC-ATGATGACTTGACGTCATCCCCA 325492 Query 143 CCTTCCTCCGGTTT 156 ||||||||||| || Sbjct 325491 CCTTCCTCCGGCTT 325478 >seq976 Length=16402300 Score = 77.0 bits (84), Expect = 3e-12 Identities = 112/158 (71%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||| ||||||||| | | | | ||| |||| ||||||| |||| |||| Sbjct 14439260 CGAGTTGCAACCTACAATCCAAATTGAGGACGAGTTT-TGGGGTTAGCTCACCCTAGCGG 14439318 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | |||| | | |||||||| | ||||| | || ||| |||| ||| Sbjct 14439319 AATTGTAACCCTTTCTCCCYGCCATTGTAGAATGTGTGTCGACCAGAGCATCAGGGGCAT 14439378 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || ||||||||||||||| ||||||||||| | || || Sbjct 14439379 GATGACTTGACGTCATCCTCACCTTCCTCCAGCTTATC 14439416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415996054630