Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq968 143 4e-32 seq638 143 4e-32 seq292 134 2e-29 seq970 105 1e-20 seq943 104 4e-20 seq207 104 4e-20 seq940 100 5e-19 seq939 100 5e-19 seq416 77.0 5e-12 seq942 75.2 2e-11 >seq968 Length=582318 Score = 143 bits (158), Expect = 4e-32 Identities = 198/276 (72%), Gaps = 1/276 (0%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | ||||| || |||||| |||||||| | | || |||| Sbjct 383561 CTCAGTGTCAGTGTCAGCTCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTA 383502 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||| ||| ||| | |||||| ||| || | | |||| || | |||| Sbjct 383501 CGCATTTCACRGCTCCACCGGAAATTCCCTCTGCTCCTACCGTACTCTAGCTTGATAGTT 383442 Query 136 TCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTA 194 || | || | || | ||||||||||| | ||| || | ||||| || |||| Sbjct 383441 TCCACTGACCTGCCAAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTA 383382 Query 195 CACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTG 254 | |||||| | |||| | |||||||||||||||| ||| ||||||||||||||| Sbjct 383381 TAGATGCTTTACGCTCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTG 383322 Query 255 CTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||||||||| ||||||||| ||| || Sbjct 383321 CTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 383286 >seq638 Length=7044 Score = 143 bits (158), Expect = 4e-32 Identities = 206/288 (72%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 5183 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 5242 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 5243 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 5302 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 5303 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 5357 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 5358 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 5417 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 5418 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 5465 >seq292 Length=1602195 Score = 134 bits (148), Expect = 2e-29 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 || |||| |||||||||| || ||| | |||||| ||||| || | |||| || Sbjct 1503492 ATCTCTATGCATTTCACCACTCCACCGGAAATTCCCTTTGCCCCTACCATACTCCAGCTT 1503433 Query 129 AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCC 188 |||||| | || | ||||||||||| | ||| || | ||||| | | Sbjct 1503432 GGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCAGACTTAAAATGC 1503373 Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 |||||||| | |||||| |||||| | |||||||||||||||| ||| ||||||||| Sbjct 1503372 CGCCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCG 1503313 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||| ||||||||| ||||||||| ||| || Sbjct 1503312 CGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1503271 >seq970 Length=9310200 Score = 105 bits (116), Expect = 1e-20 Identities = 190/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||| | | | |||||| || ||| || |||||||| | || |||| Sbjct 9294135 CTCAGTGTCACTGTCAGGCCAGCAGAGTGCTTTCACCGTTGGTGTTCTTTTCGATCTCTA 9294076 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||||| ||| ||| | |||||| |||| || | | |||| || |||| Sbjct 9294075 CGCATTTCATTGCTCCACTAGAAATTCCRTCTGCCCCTACCGTACTCCAGCTTGGTAGTT 9294016 Query 136 TCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTA 194 | | || | ||| ||||||||||| | ||| || | ||||| || ||| Sbjct 9294015 TTCACCGCCTGTCTA-GGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCARCTA 9293957 Query 195 CACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTG 254 || | |||||| |||||| | ||||||||| |||||| ||| |||||||| ||||| Sbjct 9293956 CAGACGCTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTCTATATTACCGTGGCTG 9293897 Query 255 CTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| |||||| || |||||||| ||| || Sbjct 9293896 TTGGCACAGAGTTAGTCGATACTTATTCCCCAGATA 9293861 Score = 73.4 bits (80), Expect = 7e-11 Identities = 75/98 (77%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252 |||| | |||||| |||||| | |||| | || ||| || ||| ||||||||||||| Sbjct 4075346 TACAAACGCTTTACGCCCAATCATTCCGAAAAATGCTAGCATCCTCTGTATTACCGCGGC 4075405 Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||| |||||| | ||||||||| ||| || Sbjct 4075406 TACTGGCACAAAGTTAGTTGATGCTTATTCCCCAGATA 4075443 Score = 73.4 bits (80), Expect = 7e-11 Identities = 182/275 (66%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 17 TCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTAC 76 |||| || || ||| |||||| || || ||| | |||||| | | || |||| Sbjct 9290791 TCAGTGTTAGCGTCTGCCCAGCAGAGTGCTTTTGCCGTTAGTGTTCTTTCTGATCTCTAT 9290732 Query 77 GCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA-AGAAAAACAGTT 135 |||||||| |||| ||| |||| | | || || | | |||| || |||| Sbjct 9290731 GCATTTCATCGCTCCACCGAAAATTTCCTCTACCCCTACCGTACTCCCAGCTTCGTAGTT 9290672 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | ||||||||||| | ||| || | ||||| || ||||| Sbjct 9290671 TCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAAAGCCACCTAC 9290612 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | ||||| |||| | | | | |||| |||||| ||| ||||||| ||||||| Sbjct 9290611 AGACATTTTACGCCCAGTCATTTCAAATAATGCTTGCATCCTCTATATTACCACGGCTGC 9290552 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| ||||||||| ||||||| | ||| || Sbjct 9290551 TGGCACAGAGTTAGCCGATGCTTATTKCCCAGATA 9290517 >seq943 Length=11499313 Score = 104 bits (114), Expect = 4e-20 Identities = 158/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||| |||| || |||||||||||||||||| ||| | |||||| |||| || | | | Sbjct 7348834 TTCTTCCG-ATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTA 7348892 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || |||||| | || | ||||||||||| | ||| || | ||| Sbjct 7348893 CTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGAC 7348952 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || || ||||| | ||||||||| ||| | | |||||||||||||| ||| Sbjct 7348953 TTAAAAAGCCACCTACGGACGCTTTACACCTAATCATTTCGGATAACGCTTGCATCCTCT 7349012 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||| | ||||||||||| |||||| | ||||||||| Sbjct 7349013 ATATTACCACAGCTGCTGGCACAGAGTTAGTTGATGCTTATTCC 7349056 Score = 95.1 bits (104), Expect = 2e-17 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 ||||||||||| || ||| | |||| || ||||| || | |||| | |||| Sbjct 4859543 CGCATTTCACCACTCCACCAGAAATTTCGTTTGCCCCTACCYTACTCCAACTTGGTAGTT 4859484 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | ||||||||||| | ||| || ||||| || ||||| Sbjct 4859483 TCCACCGCTTGTCCAGGGTTGAGCCCTGGGATTTGACGGTGGACTTAAAAAGCCACCTAC 4859424 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | ||||| |||||| | || ||||||||||||| ||| ||||||| |||||||| Sbjct 4859423 AGACGTTTTACGCCCAATCATTCTGGATAACGCTTGCATCCTCTGTATTACTGCGGCTGC 4859364 Query 256 TGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| |||||| || ||||||||| ||| || Sbjct 4859363 TGGCACAGAGTTAGTCGATGCTTATTCCCCAGATA 4859329 >seq207 Length=565375 Score = 104 bits (114), Expect = 4e-20 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || |||||| | ||||||| || ||| | |||||||| || Sbjct 219309 GCTTTCGTCTCTTAGTGTCAGTGTTGGCCCAGCAAAGTGCTTTCACTGTTGGTGTTCTTC 219368 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| |||||| | |||| || | | |||| | Sbjct 219369 CAGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCACTGCCCCTACCGTACTCCAA 219428 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | |||||||||| | ||| || | ||||| Sbjct 219429 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCTTGGGATTTGACGACGGACTTAAAA 219488 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| ||||| |||||| | ||| |||||| |||| ||| ||||| Sbjct 219489 AGCCACCTACAGATGCTTTATGCCCAATCATTCCAGATAACATTTGCATCCTTTGTATTG 219548 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||| ||||||| | ||||||||| ||| || Sbjct 219549 TCGCGGCTGCTGGCATCGAGTTAGCTGATGCTTATTCCCCAGATA 219593 >seq940 Length=8971605 Score = 100 bits (110), Expect = 5e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| || ||| | |||||||||||||||| ||| |||||||| Sbjct 213361 CCACCTACAGACGCTTTACGCCRAATCATTCCGGATAACGCTTGCATCCTTTGTATTACC 213302 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | |||||||||||| ||||||||| ||||||||| ||| || Sbjct 213301 GTGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 213259 >seq939 Length=3361922 Score = 100 bits (110), Expect = 5e-19 Identities = 190/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 2976345 GCTTTCGTCTCTCAGTGTCAGTGTCAGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 2976404 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 || || |||||||||| |||| |||| |||||| |||| || | |||| || Sbjct 2976405 TTGATCTCCACGCATTTCATCGCTCCACAGAAAATTCCCTCTGCCCCTACCATACTCTAG 2976464 Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTC-ACATCTGACTT-- 181 |||||| | | | | | |||||||||| | || ||| | | ||||| Sbjct 2976465 CTTGGTAGTTTCCACCCTCTGTCCA-RGGTTGAGCCC-TGGTATTCGATGGCGGACTTAA 2976522 Query 182 ---GCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| || |||| | | |||||| |||||| | |||| ||||||||||| ||| Sbjct 2976523 AAAGCCA-CCTACCTATAGACGCTTTACGCCCAATCATTCCGAATAACGCTTGCATCCTC 2976581 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 ||||||||||||||||||||| ||||||||| Sbjct 2976582 TGTATTACCGCGGCTGCTGGCATAGAGTTAGCCG 2976615 >seq416 Length=1257 Score = 77.0 bits (84), Expect = 5e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 217 TCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGC 276 |||||||||||||||| ||| ||||||||||||||||||||| ||||||| | || Sbjct 288 TCCGGATAACGCTTGCATCCTCTATATTACCGCGGCTGCTGGCACAGAGTTAGCTGATGC 347 Query 277 TTATTCC 283 ||||||| Sbjct 348 TTATTCC 354 >seq942 Length=5657841 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/103 (76%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||| | | ||||| | |||| | || |||||| |||||| || |||||||| Sbjct 3115704 CCACCTATAGACGCTTTATGCACAATRATTCTGGATAATGCTTGCATTCTTTGTATTACC 3115645 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||| |||||||| ||||||||| ||| || Sbjct 3115644 ACGGCTGCTGGCACAGGGTTAGCCGATGCTTATTCCCCAGATA 3115602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828792139609