Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq978 205 2e-50 seq975 161 2e-37 seq945 113 9e-23 seq744 111 3e-22 >seq978 Length=8767375 Score = 205 bits (226), Expect = 2e-50 Identities = 203/259 (78%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| || | | || | |||||||||| | ||||| ||||| | Sbjct 2103269 CTTCTTAGAGGGACTG-CGACCTTTTAGGCCATGGAAGTTTTGAGAAATAATAGGTCCAT 2103327 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||| || |||| || ||||||||| |||||| | | |||||||| || Sbjct 2103328 GATGCCCTTAAATATTCTAGGTCGCACGCGCACTACACGAATGTATGCAACGAGTCTATA 2103387 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||| Sbjct 2103388 GCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATT 2103446 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| ||| |||||||| |||||| |||||||||| || || |||||| || ||||| Sbjct 2103447 GCAATTGTTGGTCTTCAACTAGGAATTCCTAGTAAGCACGAGTTATCAGCTCGTGTTGAC 2103506 Query 310 TACGTCCCTGCCCTTTGTA 328 ||| ||||| ||||||||| Sbjct 2103507 TACATCCCTACCCTTTGTA 2103525 >seq975 Length=2350911 Score = 161 bits (178), Expect = 2e-37 Identities = 163/208 (78%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||| |||||||||||||||||||| || |||||| ||| |||| ||||| | |||| Sbjct 138548 AGGCCTGTGATGCCCTTAGATGTTTTGAGCCGCATGCGTGCTATACTGAAGCATTCAACA 138489 Query 182 AGTTCATCACCTTGGCCGG-AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 ||| || ||||||| | ||| || | |||||||| || ||| ||||| |||||| Sbjct 138488 AGTCTATAGCCTTGGCTGATAAGCTC-GAGTAATCTTTGAAATCTCA-TCGTGATGGGGA 138431 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | || |||||||||||||| | ||||||||||||| ||||||||| ||||||||| Sbjct 138430 TGGATCATTGCAATTATTGGTTTTCAACGAGGAATTTTTAGTAAGCGTAAGTCATCAGCT 138371 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||| | || |||||| Sbjct 138370 CGCGTCAATTACGTCCTTTCCTTTTGTA 138343 >seq945 Length=13627481 Score = 113 bits (124), Expect = 9e-23 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 178 AACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG 237 ||||||| || ||||||||| ||| |||||||||| | ||| | ||||| ||| Sbjct 9455629 AACGAGTCTATAGCCTTGGCCGAGAGGCTCGGGTAATCTT-TGAAATTTCATCGTGATGG 9455571 Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 |||||| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||| | Sbjct 9455570 AGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATAA 9455511 Query 298 GC 299 || Sbjct 9455510 GC 9455509 >seq744 Length=27178 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 5/115 (4%) Strand=Plus/Minus Query 73 TTCTTAGAGGGACTATCGGCTC---AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| ||||| | |||| | |||||||| ||||||||| |||||| Sbjct 10885 TTCTTAGAGGGACTA-CGGCTTTTTAGGCCGCAG-AAGTTTGATGCAATAACAAGTCTGT 10828 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||| |||| ||||||||| |||| |||| | |||||||| Sbjct 10827 GATGCCCTTAGATGTTATGGGGCGCACGCGCRCTACGCTGATGTATTCAACGAGT 10773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947190726912