Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq327 123 5e-26 seq338 105 1e-20 seq207 98.7 2e-18 seq976 96.9 6e-18 seq951 93.3 8e-17 seq970 86.0 1e-14 seq937 86.0 1e-14 seq397 77.0 6e-12 >seq327 Length=344481 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 270283 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAATCGACGAAATGCTTCGGG 270224 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| ||| |||| ||| | Sbjct 270223 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCGAATAGGGCAACC------TTTCGAA 270171 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| |||||||||| |||||| ||| Sbjct 270170 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAGACATCTTAGT 270114 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||| | ||| | ||||||| ||||| |||||||||||||||| || Sbjct 270113 AGCCAGAAGAAAAGAGAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 270054 Query 249 CCT 251 ||| Sbjct 270053 CCT 270051 >seq338 Length=1068613 Score = 105 bits (116), Expect = 1e-20 Identities = 165/236 (70%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||| | | ||||| ||| | ||| || | Sbjct 549217 GGTGGATACCTAGGCACCCAAAGACGAGGAAKGGCATAGTAATCGACGAAATGCTTCGRG 549276 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| | |||| ||| |||| ||| | Sbjct 549277 GAGTT-GAAAATATGCATAGATCCGGAGATTCCYGAATAGGGCAACC------TTTYGAA 549329 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | |||| || ||| ||||||||||||||||| ||| Sbjct 549330 C--TGC-TGCTGAATCCATGRGCRGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 549386 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||||||| ||| | ||||| | ||||| ||| ||| |||||||| Sbjct 549387 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCYCRTAGTAGCGGCAAGCAAAATGGGA 549442 >seq207 Length=565375 Score = 98.7 bits (108), Expect = 2e-18 Identities = 95/117 (81%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| ||||||||||||||||| |||||| || Sbjct 216134 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGC--CA 216077 Query 196 G-GAAAAGAAATCAACCGAGATTCCCA-AAGTAGTGGCGAGCGAAATGGGATGAGCC 250 | ||||||||| ||| | ||||||| |||||| |||||||||||||||| |||| Sbjct 216076 GAGAAAAGAAAGCAAAAGCGATTCCCGTAAGTAGCGGCGAGCGAAATGGGAGCAGCC 216020 >seq976 Length=16402300 Score = 96.9 bits (106), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || || ||||| ||||||| ||| | ||| ||| Sbjct 12163037 GGTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGTAATCGACGAAATGCTTTGGG 12163096 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||| || |||| | |||| ||| |||| ||| | Sbjct 12163097 GAGTT-GAAAATAAGCATAGATTCGAAGATGCCTGAATAGGGCAACC------TTTCGAA 12163149 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| | |||||| ||| || | |||| || ||| ||||||||||| |||| ||| Sbjct 12163150 C--TGC-TYCTGAATCCATGGGCAGGCAAGAGACAACCTAGCGAACTGAAATATCTTAGT 12163206 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| | ||| |||||||||||||||| || Sbjct 12163207 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAATAGGGGCGAGCGAAATGGGAGCAG 12163266 Query 249 CCT 251 ||| Sbjct 12163267 CCT 12163269 >seq951 Length=4342423 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| || | |||| || ||| ||| |||||| ||||||||||||| | Sbjct 701542 TGCTAAATCCATGGGCAGGCAAGAGATAACCTGGCAAACTGAGACATCTAAGTAGCCAGA 701601 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| | |||| ||||||||||||||| ||||| Sbjct 701602 GGAAAAGAAAGCAAAAGCGATTCCCGTAATAGTAGCGAGCGAAATGGGAGCAGCCT 701657 >seq970 Length=9310200 Score = 86.0 bits (94), Expect = 1e-14 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||| || | |||| || ||| ||| ||||||||||||| |||||| ||| Sbjct 9281555 CTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAACTGAAACATCTTAGTAGCCAGAGG 9281614 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| |||| ||| | |||||||| ||||| |||||| |||||||| Sbjct 9281615 AAAGGAAAGCAAAAGCGATTCCCATAGTAGCAGCGAGCAAAATGGGA 9281661 >seq937 Length=9237706 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/117 (79%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTAT-GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGC 194 |||||||||||| |||| |||| || ||| ||| |||| ||||||||| ||||| Sbjct 6992016 TGCTGAATACAT--GTATTGCAAGAGATAACCGGGCAAACTAAAACATCTA-GTAGCCAG 6991960 Query 195 AGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||| ||| |||||| | ||||| ||||||| |||||||| ||||| Sbjct 6991959 AGGAAAAGAAAGCAAAAACGATTCCTATAGTAGCGGCGAGCAAAATGGGAACAGCCT 6991903 >seq397 Length=13534 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 5216 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 5275 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 5276 GGCGAGCGAGAGCGGAT 5292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918391008864