Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq562 426 5e-117 seq938 275 2e-71 seq976 120 1e-24 seq942 113 1e-22 seq397 78.8 3e-12 >seq562 Length=5960891 Score = 426 bits (472), Expect = 5e-117 Identities = 374/459 (81%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||| |||||||| |||| | || |||||||| || ||| Sbjct 3213859 CTTCTGTTCCACACAAGATTCCTGTTCTCGTTGAGCTCATCTCAGGACACCGACGCTATC 3213800 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||| ||||| |||||||||| |||||||| | ||||||||| Sbjct 3213799 TTTTAACAGATGTGCCGCCCCCGCCAA-CTCCCCACCTAACAATGTCTTTCACCCGGATC 3213741 Query 127 GGCCCGCGAAGGA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 | || |||| | ||||| ||| ||| || || || || | || | |||| Sbjct 3213740 GACCGCYGAAGTAGCCTTAGGTCCAAAAAGAGG--GGCAGAGCCCCGCCTCTGATTCACA 3213683 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 | ||||||||| || | ||| || |||||||||||||| ||| || |||||||| Sbjct 3213682 AAATAAGTAAAATAATGTTAAAAGTGGTGGTATTTCACTTTTGCCTTT-CGACTCCCACT 3213624 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3213623 TATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGGTCT 3213564 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||| | |||||| |||||||| ||||||||||||||||||| || | ||||||| Sbjct 3213563 TCTTTCCCTGYTGATTCTGCCAAGCCTRTTCCCTTGGCTGTGGTTTCACT-GGTAGTAGA 3213505 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 ||||||||| || ||| ||||||||||||||||| ||||||||| |||||| |||||| Sbjct 3213504 CTGGGACAGTGAGAGTCTTGTTAATCCATTCATGCGTGTCACTAATAAGATGATGAGGCA 3213445 Query 425 TTTGGCTACC-TTAAGAGAGTCATAGTTACTCCCGCCGT 462 |||||||||| |||||||||||||| |||||||||| || Sbjct 3213444 TTTGGCTACCTTTAAGAGAGTCATAATTACTCCCGCAGT 3213406 >seq938 Length=6919174 Score = 275 bits (304), Expect = 2e-71 Identities = 232/284 (82%), Gaps = 11/284 (4%) Strand=Plus/Minus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 |||||||| ||||||| | ||||||||| | ||| |||||||||||||||| | || ||| Sbjct 6408769 CACTTATTTTACACCTTTTAAGTCATTTTATAAATTCGGACTAGAGTCAAGTTTAATAGG 6408710 Query 301 GTCTTCTTTCCCC-GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 || || || ||| |||||||| || ||||||||||||||| ||| |||||||| |||| Sbjct 6408709 GTTTTTTTGCCCTTGCTGATTCTGCTAAGCCCGTTCCCTTGAGTGTAGTTTCGCTGGATA 6408650 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||| ||||| | ||| ||||| ||||||| ||| ||| | ||||||||||||| | | Sbjct 6408649 GTAGACAGGGAAAATGG-AATCTYGTTAATCAATTAATGTACATCACTAATTAGATAATG 6408591 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||| ||||||||||||||||||| ||| |||| | || ||||||| Sbjct 6408590 AGGCATTTG--------AAGAGAGTCATAGTTACTCTYGCCATTTATCYGCATTTGGTTG 6408539 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||||||||||| ||||||||||||| |||| |||||||| Sbjct 6408538 AATTTCTTCACTTTAACATTCAGAGCACCAAGCAG-AATCACAT 6408496 >seq976 Length=16402300 Score = 120 bits (132), Expect = 1e-24 Identities = 82/92 (89%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 198 aaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTC 257 |||| ||| ||||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct 13945950 AACGTTAAAAGTAGTGGTATTTCACTTTCGCCTTTR-GGCTCCCACTTATCCTACACCTC 13946008 Query 258 TCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 |||||||||||||||||||||||||||||||| Sbjct 13946009 TCAAGTCATTTCACAAAGTCGGACTAGAGTCA 13946040 >seq942 Length=5657841 Score = 113 bits (124), Expect = 1e-22 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||| || ||| ||||||||||||||| | || | |||||||||||||| |||| Sbjct 1558538 TTTTGTTCCACACGAGATTTCTGTTCTCGTTAAGCTCATCTTAGGACACCTGCATTATCT 1558479 Query 68 TTTAACAGATGTGCCG-CCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||| ||||||||| |||||||||||||||| || |||| ||||| || ||| ||| Sbjct 1558478 TTTAACCGATGTGCCGCCCCCAGCCAAACTCCCTACTTGACCATGTCTTCTGCCCAGATT 1558419 Query 127 GGCCCGCGAAGGA-CCTTA 144 | || |||| | ||||| Sbjct 1558418 GACCATTGAAGCAGCCTTA 1558400 Score = 104 bits (114), Expect = 8e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||| || |||||||| || |||||||||||||||| Sbjct 1558817 CTTAGGACACCTGCGTTATCTTTTAACAAATTTGCCGCCCTAGTCAAACTCCCCACCTGA 1558758 Query 107 CAATGTCATCAACCCGGATCGGCCCGCGAAGGACCTT 143 |||||| || ||||||||| | ||||| | ||| Sbjct 1558757 TAATGTCTTCCGCCCGGATCGATCGCCGAAGCAGCTT 1558721 >seq397 Length=13534 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 7594 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 7535 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 7534 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 7489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635183991392