Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq943 138 2e-30 seq940 118 2e-24 seq638 116 8e-24 seq968 113 1e-22 seq416 111 3e-22 seq970 98.7 2e-18 seq292 91.5 3e-16 seq950 82.4 2e-13 seq942 82.4 2e-13 seq948 78.8 2e-12 seq971 73.4 8e-11 >seq943 Length=11499313 Score = 138 bits (152), Expect = 2e-30 Identities = 198/280 (71%), Gaps = 18/280 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| ||||||| |||||||||||| || ||| || | | Sbjct 4859369 GGCTGCTGGCACAGAGTTAGTCGATGCTTATTCCCCAGATAC-----------CATAATT 4859321 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||| | ||||| ||| |||| Sbjct 4859320 GC------TTCTTCTCCAGGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCTACGC 4859268 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 4859267 GACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAG 4859208 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | |||| || Sbjct 4859207 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATTGAT 4859148 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATG 280 | ||| || ||| ||| || || | | |||| |||||| Sbjct 4859147 CATAGCCTTGGTAAGCCATTGCCTCACTAACTAGCTAATG 4859108 Score = 100 bits (110), Expect = 6e-19 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 145 CCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCC 204 |||||| || ||||| |||||||||||||||||||||| ||| |||||||||||| || Sbjct 7349149 CCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 7349208 Query 205 AATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCC 264 | ||||| || | |||||||||| | ||| ||| | | || ||| || ||||| Sbjct 7349209 AGTGTGGTTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCTATTACCT 7349268 Query 265 CGCCTACTACCTAAT 279 | || ||| ||||| Sbjct 7349269 CACCACCTAGCTAAT 7349283 >seq940 Length=8971605 Score = 118 bits (130), Expect = 2e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | | | |||| || Sbjct 213236 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGVTCCGTCAGGCTT 213178 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| |||||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 213177 TCGCCCATTGCAGAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 213118 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| || | ||| ||| ||| || ||| || || Sbjct 213117 TCCCAGTGTGGCTGATCATCCTCTTGGACCAGCTACTGATCATAGCCTTGGTAAGCTATT 213058 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| |||| Sbjct 213057 GCCTCACCAACTAGTTAAT 213039 >seq638 Length=7044 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 5518 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 5577 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 5578 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 5637 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 5638 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 5697 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 5698 GCAGGCTCATCAAACAGCG 5716 >seq968 Length=582318 Score = 113 bits (124), Expect = 1e-22 Identities = 202/296 (68%), Gaps = 20/296 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAA-GCTCCCACACG 59 |||||||||||| |||||||||||||||||||| || ||| || ||| | Sbjct 383326 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCATCATTGCTTC------ 383273 Query 60 TGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACG 119 || ||| |||||||||| || | |||| | ||||| ||| |||| Sbjct 383272 ---------TTCTTCGGG---AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACG 383226 Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179 | | ||| ||| || ||| |||||| || ||||| ||||||||||||||||| Sbjct 383225 TAGCATTGCTCCGCCAGGCTTTCGCCCATTGRTGAAAATTCCCCACTGCTGCCTCCCGTA 383166 Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239 ||||| ||| || ||||||||| ||| ||||| || | || |||| || | |||| | Sbjct 383165 GGAGTCTGGGCCMTGTCTCAGTCCCAGTGTGGCTGATCATCATCTCGGACCAGCTATTGA 383106 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || || || ||| || || || | || |||| ||||| ||||| ||| || Sbjct 383105 TCATATCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 383050 >seq416 Length=1257 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | | ||| ||| ||||| | | ||| ||| || Sbjct 384 AAAAGAAGTTCACGACCCGTGGGMC-TTCTACCTCCACGCGGCATTGCTCCGTCAAGCTT 442 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| || | ||||||||||||||||| ||| ||||||||||| Sbjct 443 TCGCCCATTGCAGAAAATTCCCCATTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 502 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| ||| || ||| || || Sbjct 503 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTAYTGATCATAGCCTTGGTAAGCTATT 562 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 563 GCCTCACCAACTAGCTAAT 581 >seq970 Length=9310200 Score = 98.7 bits (108), Expect = 2e-18 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | | || | | ||| ||||||||| | | ||| |||| || Sbjct 9293838 AAAAGAAGTTCCCGACCTGTGGG-CTTTCCACCTTCACGCAGCATTGCTCCATCAGGCTT 9293780 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 9293779 TCGCCCATTGCGAAAAATTCCCCATTGCTGTCTCCCGTAGGAGTTTGGGCCGTGTCTCAG 9293720 Query 201 TTCCAATGTGGGGGACCTTCCTCT 224 | ||| ||||| || | |||||| Sbjct 9293719 TCCCAGTGTGGCTGATCATCCTCT 9293696 Score = 93.3 bits (102), Expect = 9e-17 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || |||||| || |||| ||||||||||||||||| |||| | | || Sbjct 9290477 TCAGGCTTTCACCCATTGTAGAAAATTCTCCACTGCTGCCTCCCGTAAGAGTCTAGGCCA 9290418 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC-CCTATCCATCGTAGGCTAGG 251 ||||||||| ||||||||| ||| | ||||||| ||||| ||| ||| ||| || || Sbjct 9290417 TGTCTCAGTCCCAATGTGGCGGATCATCCTCTC-GAACCAGCTACTGATCATAGCCTTGG 9290359 Query 252 TGGGCCGTTACCCCGCCTACTACCTAAT 279 | || || || | || |||| ||||| Sbjct 9290358 TAAGCTATTGCCTCACCAACTAGCTAAT 9290331 Score = 82.4 bits (90), Expect = 2e-13 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | |||| | || ||||| || || || | ||| |||| || Sbjct 4075466 AAAAGAAGTTCGCGATCCATGGA-CCTTCTAACTCCATGCGGAATTGCTCTGTCAGGCTT 4075524 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||| ||||||||| ||||||| ||| || ||||| | Sbjct 4075525 TCGCCCATTGTGGAAAATTCCCCACTACTGCCTCCCATAGGAGTCTGGGCCATGTCTTAA 4075584 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | ||||||| || | | |||| || | ||| ||| | | || ||| || | Sbjct 4075585 TCCTAATGTGGCTGATCATACTCTTGGACCAGCTACTAATCATCG-CTTGGTAAGCTATC 4075643 Query 261 ACCCCGCCTACTACCTAATGGAACGCA 287 ||| | || |||||||||||| | ||| Sbjct 4075644 ACCTCACCAACTACCTAATGGGATGCA 4075670 >seq292 Length=1602195 Score = 91.5 bits (100), Expect = 3e-16 Identities = 187/279 (67%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 1503311 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 1503263 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| | | | || | |||||| ||| |||| Sbjct 1503262 GC------TTCTTCTCCGGAAAAAGAAGTTCATGACCTGT-GCACCTTCTATCTTTACGC 1503210 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 || | ||| ||| || || ||||| || ||||| |||||||||||||| | | Sbjct 1503209 GACATTGCTCCGTCAAGCTTTCACCCATTTCGAAAAATTCCCCACTGCTGCCTCCCATTG 1503150 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| || |||||||||||| | ||||||| || | ||||||| || | ||| || Sbjct 1503149 GAGTCTGCGCCGTGTCTCAGTCCTAATGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 1503090 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | | ||| || ||||| | || |||| ||||| Sbjct 1503089 CATCGCGTTGGTAAGCTATTACCTCACCAACTAGCTAAT 1503051 >seq950 Length=8950308 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || | | |||||| || ||||| |||||||||||| ||||||||| | | ||| Sbjct 5318004 TCAGGCTTTTGCCCATTGCGAAAAATTCCCCACTGCTGCCTCTCGTAGGAGTCTAGGCCG 5317945 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||| ||| ||| ||||| || | ||||||| || | ||| | ||| || || ||| Sbjct 5317944 TGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACCGATCATACCCTTGGT 5317885 >seq942 Length=5657841 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 132 TTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACC 191 ||||| || || |||||| || ||||| | ||||||||||||||||||| ||| || Sbjct 3115504 TTCAGGCTTTCACCCATTGCGAAAAATTCCCTAATGCTGCCTCCCGTAGGAGTCTGGGCC 3115445 Query 192 GTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 |||||||| | ||| ||||| || | ||||||| || | ||| Sbjct 3115444 GTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACCAYCTA 3115401 >seq948 Length=7662486 Score = 78.8 bits (86), Expect = 2e-12 Identities = 105/144 (73%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || ||||||||| ||||| ||| ||| | || | ||| ||| ||| Sbjct 7090145 AAAAGAAGTTCACGATCCGTAGA-CCTTCTACCTCCACACGACATTGCTCCGTCAAACTT 7090087 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| |||||| | || | || || ||||||||||||||| ||| || | Sbjct 7090086 TTGCCCATTGCTAAATATTTCCCAATACTACCACCCGTAGGAGTTTGGGCCG---CTTAA 7090030 Query 201 TTCCAATGTGGGGGACCTTCCTCT 224 | ||| |||| || | |||||| Sbjct 7090029 TCCCAGTGTGACTGATCATCCTCT 7090006 >seq971 Length=2854842 Score = 73.4 bits (80), Expect = 8e-11 Identities = 136/199 (68%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | || || ||| ||| | | | ||| | || || Sbjct 1726013 AAAAGAAGTTCACGACCCGTGGG-CCATCTACCTCCACACGGCATTGCTCTGTTAGGCTT 1725955 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || || || |||||||||||||||| | | |||||||||| Sbjct 1725954 TCGCCCATTGCGGAAC------CATTGTTGCCTCCCGTAGGAGTCTAGGCCGTGTCTCAA 1725901 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| ||| || ||| || || Sbjct 1725900 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATAGCCTTGGTAAGCTATT 1725841 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 1725840 GCCTCACCAACTAGCTAAT 1725822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068789536448