Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhazya_20stricta_20[genbank_20GCA_5F001752375.1_202016-10-04] 979 sequences; 274,354,041 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq978 412 1e-112 seq913 389 1e-105 seq142 277 5e-72 seq943 273 7e-71 seq979 98.7 3e-18 seq977 80.6 8e-13 >seq978 Length=8767375 Score = 412 bits (456), Expect = 1e-112 Identities = 409/516 (79%), Gaps = 15/516 (3%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTT-ATTGTCACTACCT 60 |||||||||||||||| |||| | | ||||| ||| | | ||| |||||||||||| Sbjct 2097193 TACTCATTCCAATTACCAGACTCTAT-GAGCCTGATATTATTTTTTTATTGTCACTACCC 2097135 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || |||||| ||||||| ||||||| ||||||| |||||||||| ||||| | |||| || Sbjct 2097134 CCTCGTGTCAGGATTGGATAATTTGTGCGCCTGTTGCCTTCCTTAGATGTCGGAGCCATT 2097075 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAAC-CCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| ||||||||||||||| |||| || ||||| || | ||| | ||||||||| Sbjct 2097074 TCTCAGTCTCCCTCTCCGGAATTGAACTCCAAATTCTCCATCACCTATCACTACCATGGT 2097015 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||||| |||||||||||| || |||||| |||| |||||||||||| || || | Sbjct 2097014 AGGCCATTATCCTACCATCAAACATTGATAAGGCAAAAATTTGAATGATGTGTCATCGAC 2096955 Query 240 TCAAGG-CCATGCGATTCGTTAAGTTAT-TATGAATCACCA-AGGAGCCCCG----AAG- 291 | ||| | |||||| ||| |||||| ||||| | || || ||| || ||| Sbjct 2096954 ACGAGGACTGTGCGATCCGTCGAGTTATCTATGATGAATCATAGCAGCAACGAGCAAAGC 2096895 Query 292 -GGCGTTGGTTTTTTATCTAATAAATACA-CCCCTTCCGAAGTCGGGGTTTTTAGCATGT 349 || ||| || |||||||||||| || | | || ||||||||||||| | ||| | Sbjct 2096894 CCGCATTGACCTTATATCTAATAAATGCATCTCTTTTAGAAGTCGGGGTTTGTTGCACAT 2096835 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||||||||| |||| ||| ||| |||||| |||| ||||| Sbjct 2096834 ATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-AAGATACCATCAAACAAACTATAAC 2096776 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATG 468 |||||||||||| ||||||||||||||| | | ||| | | ||||||| ||||| ||| Sbjct 2096775 TGATTTAATGAGTCATTCGCAGTTTCACAATCTGAATTAGTTCATACTTACACATGTATG 2096716 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| |||||||||| || Sbjct 2096715 GCTTAATCTTTGAGACAAGCATGTGACTACTGGTAG 2096680 >seq913 Length=1144 Score = 389 bits (430), Expect = 1e-105 Identities = 292/337 (87%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1141 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACA 1082 Query 232 TCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG 291 ||| |||| | ||||||| |||||||| ||||||| |||| ||||| | | | | || Sbjct 1081 TCGTCGGCACGAGGCCATACGATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAG 1023 Query 292 GGC---GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCAT 347 || | ||| ||||||||||||||||| ||||||| ||||||||| || | ||| Sbjct 1022 AGCCCGGCTGGCCTTTTATCTAATAAATACGACCCTTCCAGAAGTCGGG-TTGTGCGCAC 964 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| |||||||||| |||| ||| ||| |||||| |||| ||| Sbjct 963 GTATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-AAGATACCATCAAACAAACTATA 905 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct 904 ACTGATTTAATGAGCCATTCGCAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCAT 845 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||| Sbjct 844 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 808 >seq142 Length=624436 Score = 277 bits (306), Expect = 5e-72 Identities = 289/374 (77%), Gaps = 13/374 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||| ||| |||| | | | | ||| | |||||||||||| ||||| Sbjct 250035 GTACTCATTCCAAGTACCAGACTCT---GTGATCAATATTATTATTTATTGTCATTACCT 249979 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | || | || |||||||||||||||| ||||||| ||||||||||||||||||||| || Sbjct 249978 CTCCCTATCAGGATTGGGTAATTTGCATGCCTGCTACCTTCCTTGGATGTGGTAGCCATT 249919 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| |||||||||| ||||| |||||||||||| || | |||| | ||||||||| Sbjct 249918 TCTCAAGCTCCCTCTCTGGAATAGAACCCTAATTCTCCATCACCCTTCACCACCATGGTA 249859 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC- 239 ||| |||||||||| || |||||||||| ||| ||||| | |||||| | || || || Sbjct 249858 GGCTACTATCCTACAATTGAAAGTTGATCGGGTAGAAACTAGAATGATGCGTCCCCAGCA 249799 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA--AGG----G 293 | | ||| |||||| ||| || |||| ||||||| | ||| ||| ||| Sbjct 249798 TAAGGGCTGTGCGATCCGTCAATTTATCGTGAATCA--TTGCAGCAACGAGCAGGCCCTC 249741 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 | ||| | |||||||||||||| || |||||| |||||| ||||| | | | || || Sbjct 249740 CATTGACTATTTATCTAATAAATGCATGCCTTCCAGAAGTCAAGGTTTGTTGAACGTTTT 249681 Query 353 AGCTCTAGAATTAC 366 |||||||||||||| Sbjct 249680 AGCTCTAGAATTAC 249667 Score = 143 bits (158), Expect = 8e-32 Identities = 119/143 (83%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 |||| | ||||||| | || ||| || ||||||| |||| |||| ||||||||||||| Sbjct 246801 TTACTATGGTTATCTGAGCAG-AAGATATTATCAAACAAACTATAATTGATTTAATGAGC 246743 Query 423 CATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGA 481 ||||||||||||||| || | ||| | | ||||||| | |||||| || |||||||||| Sbjct 246742 CATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACAAATGCATAGCGTAATCTTTGA 246683 Query 482 GACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| || Sbjct 246682 GACAAGCATATGACTACTGGTAG 246660 >seq943 Length=11499313 Score = 273 bits (302), Expect = 7e-71 Identities = 273/344 (79%), Gaps = 19/344 (6%) Strand=Plus/Minus Query 174 CATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 ||||| || |||||||| |||||||| ||||||||||||| |||| |||| | | | Sbjct 5872542 CATGGCAGAGCACTATCC-ACCATCGAGAGTTGATAGGGCACGAATT-GAATCATGCG-C 5872486 Query 234 GCCGG-CTCAAGGCCATGCGATTCGTTAAGT-TATTATGAATCACCAAGGAGCCCCGAAG 291 ||||| | || ||| ||||| ||| ||| ||| |||||||| | | ||| || ||| Sbjct 5872485 GCCGGACACAGAGCCGAGCGATCCGTCGAGTGTATCATGAATCATC--GCAGCGCCAAAG 5872428 Query 292 ---------GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTT 341 ||||| | ||||||||||||||| || |||||| |||||| ||||| Sbjct 5872427 CACAGCTCCGGCGTCGACCTTTTATCTAATAAATGCATCCCTTCTAGAAGTCAAGGTTTG 5872368 Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 | ||| ||||||||||||||||||| |||||||||| ||| ||| ||| |||||| || Sbjct 5872367 TTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAA-AAGATACCATCAAACAA 5872309 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGA 460 || |||||| |||||||||||||||||||||||||| | | ||| | ||||||||| | Sbjct 5872308 ACTATAACTAATTTAATGAGCCATTCGCAGTTTCACAATCTGAATTAGTTTATACTTACA 5872249 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5872248 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGACAG 5872205 >seq979 Length=5567346 Score = 98.7 bits (108), Expect = 3e-18 Identities = 151/200 (76%), Gaps = 24/200 (12%) Strand=Plus/Minus Query 321 CCCTTCC--GAAGTCGGGGTTTT-TAGCA-TGTATTAGCTCTAGAATTACC-ACGGTTA- 374 ||||||| |||||||||| ||| | ||| ||||| |||||| |||||| ||||||| Sbjct 4022002 CCCTTCCAGGAAGTCGGGGGTTTGTTGCACTGTAT-AGCTCTCGAATTATATACGGTTAA 4021944 Query 375 TCCATGTAGTAAGGT-ACTATCAAATAAACGATAACTGATTTAATG--AGCCATTCGCAG 431 ||| |||| ||| | || ||||| || ||||||||||||||| || ||||||||| Sbjct 4021943 TCCGAGTAGGAAGTTTACCATCAACCAAT--ATAACTGATTTAATGGAAGGCATTCGCAG 4021886 Query 432 T------TTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 | ||| | || | ||| || ||| ||| |||||||||||| ||||||||||| Sbjct 4021885 TCTGGTTTTCGCAGTCTGAATTAGTTCATAATTACACATGCATGGCTACATCTTTGAGAC 4021826 Query 485 AAGCAT--AT--GACTACTG 500 ||||| || |||||||| Sbjct 4021825 -AGCATTGATGGGACTACTG 4021807 >seq977 Length=5547227 Score = 80.6 bits (88), Expect = 8e-13 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2570846 TTACACATGCATGACTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2570798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510385213184