Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq25763 136 5e-30 seq25567 125 1e-26 seq25691 122 1e-25 seq25277 118 1e-24 seq25422 100 4e-19 seq25707 96.9 5e-18 seq25602 96.9 5e-18 seq25594 87.8 2e-15 seq25371 84.2 3e-14 seq25211 82.4 1e-13 seq24827 77.0 5e-12 >seq25763 Length=163161 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 112984 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 112926 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 112925 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 112879 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 112878 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 112825 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 112824 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 112765 Query 246 GTA 248 ||| Sbjct 112764 GTA 112762 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 139829 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 139887 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 139888 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 139934 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 139935 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 139988 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 139989 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 140048 Query 246 GTA 248 ||| Sbjct 140049 GTA 140051 >seq25567 Length=417175 Score = 125 bits (138), Expect = 1e-26 Identities = 173/242 (71%), Gaps = 20/242 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 367838 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 367780 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||| || || || || ||||| || Sbjct 367779 AGACCTGTGTTTTTGGTAAACAGTTGCCCGGGCCTGGTCACTACGACCCCCT-------- 367728 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||| | ||||||||||| |||||||||| Sbjct 367727 -----TTGTG----AGGAG--GCACCCCTTCTCCTGTAGTTACGGGGCTATTTTGCCGAG 367679 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || || ||| ||||||||||||| | |||||||||||| Sbjct 367678 TTCCTTAGAGAGAGTTGTCTCGCACCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 367619 Query 241 TT 242 || Sbjct 367618 TT 367617 >seq25691 Length=910092 Score = 122 bits (134), Expect = 1e-25 Identities = 169/237 (71%), Gaps = 20/237 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||| ||||||| || |||||| | ||||| | ||| || |||| Sbjct 62661 CCTTCCGGCACTGGGCAAGCGTCAGGCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 62719 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||||||| || || |||||||| || Sbjct 62720 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCCT------------- 62766 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| ||||||| || ||||| Sbjct 62767 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCT 62820 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | || | || ||||||||||||| | ||||||||| |||| Sbjct 62821 TAGAGAGAGTTGTCTCGCTCCCCAAGGTATTCTCTACCTACCTACCTGTGTCAGTTT 62877 Score = 118 bits (130), Expect = 1e-24 Identities = 172/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||| ||| ||||| || |||||| | ||||| ||| ||| |||| Sbjct 86262 CCTTCCGGCACTGGGTAGGTGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAGAGACC 86204 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||||||||||||||| || || |||| ||| || Sbjct 86203 TGTGTTTTTAGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT------------- 86157 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||| ||||||||||||| ||||||| || ||||| Sbjct 86156 TTGTG----AGGAG--GCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCTGAGTTCCT 86103 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 ||| | |||| | || | ||| ||||||||||||| | || ||||||||||| | Sbjct 86102 TAAAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACTTGTGTCGGTTTCGG 86043 Query 246 GTA 248 ||| Sbjct 86042 GTA 86040 Score = 104 bits (114), Expect = 3e-20 Identities = 171/244 (70%), Gaps = 22/244 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 38584 CCTTCCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 38526 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||| || || || |||||||| || Sbjct 38525 TGTGTTTTTGGTAAACAGTAGCCCGGGCCTGGTCACTGCGACCCCCT------------- 38479 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||| |||||| || ||| |||||| ||| ||||| Sbjct 38478 TTGTG----AGGAG--GCACCCCTTCTCCTGAAGTTCCGAGGCTATTTTGTCGAGTTCCT 38425 Query 186 TAACCACAGTTCACCCGAACGCCTTAG-TATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || | |||||| |||||||||||| | |||||||||| ||| Sbjct 38424 TAGAGAGAGTTGTCTCGCGC-CCTTAGGTATTCTCTACCTACCTACCTGTGTCGATTTTG 38366 Query 245 GGTA 248 |||| Sbjct 38365 GGTA 38362 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| ||||||| || ||||||| | |||| | Sbjct 106158 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCAGAGTTCCTTAGAGAGAGTTGTCT 106217 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| | ||||||||| |||| |||| Sbjct 106218 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCAGTTTCGGGTA 106265 Score = 96.9 bits (106), Expect = 5e-18 Identities = 168/243 (69%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||| ||||| || |||||| | ||||| ||| | | ||| Sbjct 167124 CCTTCCGGCACTGGGCAGGAGTCAGCCCCCATACATGGTCTTACAA-CTTTGTAGAGAC- 167181 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||||||||||||| | || || |||||||| || Sbjct 167182 TGTGTTTTTAGTAAACAGTCACCCGGGCCTGGTCACTGCGACCCCCT------------- 167228 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||| |||||| || |||||||||||| |||||||||| ||||| Sbjct 167229 TTGTG----AGAAG--GCATGCCTTCTTCCAAAGTTACGGGGCTATTTTGCCGAGTTCCT 167282 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||| ||||||| | Sbjct 167283 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTATCGGTTTCGG 167342 Query 246 GTA 248 ||| Sbjct 167343 GTA 167345 >seq25277 Length=160818 Score = 118 bits (130), Expect = 1e-24 Identities = 172/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 113762 CCTTCCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 113820 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||||||||||| || | || || |||||||| || Sbjct 113821 TGTGTTTTTAGTAAACAATCACCCGGGCCTGGTCACTGCGACCCCCT------------- 113867 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||| ||| ||||| Sbjct 113868 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCT 113921 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | | | ||| ||||||||||||| | |||||||||||||| | Sbjct 113922 TAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 113981 Query 246 GTA 248 ||| Sbjct 113982 GTA 113984 >seq25422 Length=252536 Score = 100 bits (110), Expect = 4e-19 Identities = 168/243 (69%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| | ||||||||||| || |||||| | ||||| | ||| | || | Sbjct 128959 CCTTTCGGCACTGTGCAGGCGTCAGCCCTCATACATAGTCTTAC-GACTTTGTGGAGATC 129017 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||||||||||||||| | || || |||||||| || Sbjct 129018 TGTGTTTTTAGTAAACAGTCGGTCTGGCCTGGTCACTGCGACCCCCT------------- 129064 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || | ||||||||||| |||||||| |||| ||||| |||| ||||| Sbjct 129065 TTGTG----AGGAG--GTACCCCTTCTCCTGAAGTTACAGGGCTATTTTACCGAGTTCCT 129118 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| || |||||||||| | |||||||||||||| | Sbjct 129119 TAGAGAGAGTTGTCTCGTGCCCCTAGGTGTTCTCTACCTATCTACCTGTGTCGGTTTCGG 129178 Query 246 GTA 248 ||| Sbjct 129179 GTA 129181 >seq25707 Length=1105073 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||| || |||||||||| ||||||| | |||| | Sbjct 340673 GGCACCCCTTCTCCCGAAGTTACGGAGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 340614 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||| | | |||||||||||||| |||| Sbjct 340613 CGTGCCCCTAGGTATTCTCTATGTACCTACCTGTGTCGGTTTCAGGTA 340566 >seq25602 Length=512129 Score = 96.9 bits (106), Expect = 5e-18 Identities = 167/243 (69%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | ||| | | |||| Sbjct 472027 CCTTCCGGCACTGGGCAGGCGTCATCCCCAATACATGGTCTTAC-GACTTTGTAGAGACC 472085 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||| | ||||||||| || | || |||| ||| || Sbjct 472086 TGTGTTTATTATAAACAGTCACTAGGGCTTGGTCACTGCAACCCCCT------------- 472132 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||| ||||||||||||||| ||||||| || ||||| Sbjct 472133 TTGTG----AGGAG--GCACCCCTTCTTCCGAAGTTACGGGGCTATTTTGCAGAGTTCCT 472186 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | |||| | || | ||| ||||||| ||||| | |||||||||| ||| | Sbjct 472187 TCAAGAGAGTTGTCTCGTGCCCCTAGGTATTCTTTACCTACCTACCTGTGTCGATTTCGG 472246 Query 246 GTA 248 ||| Sbjct 472247 GTA 472249 >seq25594 Length=490491 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| |||||| ||||| |||||||| | |||||||| | | || | Sbjct 193109 GGCACCCCTTCTCCTAAAGTTATGGGGCTATTTTGCCAAGTTCCTTAAAGAGAATTGTCT 193050 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||||||||||| | |||||||||||||| |||| Sbjct 193049 TGTGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTTGGGTA 193002 >seq25371 Length=211134 Score = 84.2 bits (92), Expect = 3e-14 Identities = 166/243 (68%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || |||||||| ||||| | |||||||| ||||| ||| ||| | | Sbjct 125947 CCTTCCAACATCGGGCAGGTGTCAGACTCTATACATCTTGTTACCA-CTTAGCAGAGTTC 126005 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | | |||||| |||| |||| || |||||| | | | ||| | | || | Sbjct 126006 TCTATTTTTAATAAATAGTCACTACCCTCTGGTATGTCT--CCATTTCTTAATAAAAAGA 126063 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | | | | | ||||| | || |||||||||||||| |||||| ||| ||||| Sbjct 126064 TAG-------GAAAT--CACCCATCCTTCCGAAGTTACGGGGTCATTTTATCGAGTTCCT 126114 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | || |||| | | | ||| |||||| || ||| || ||||||||||||||| | Sbjct 126115 TCAACATGGTTCTCTCAAGTGCCCTAGTATACTATACTTGTTCACCTGTGTCGGTTTGGG 126174 Query 246 GTA 248 ||| Sbjct 126175 GTA 126177 >seq25211 Length=133860 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| |||||||||||| |||||||||| ||||||| | |||| | Sbjct 56510 GGCACCCCTTCTCCCAAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 56451 Query 201 CGAACGCCTTAGTATTCTCTACC 223 || | ||| |||||||||||| Sbjct 56450 CGCGCCCCTAGGTATTCTCTACC 56428 >seq24827 Length=42816 Score = 77.0 bits (84), Expect = 5e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||| | ||||||| |||| |||||| ||| || |||| | |||| | Sbjct 26985 GGCACCCCTTCTTTCAAAGTTACAGGGCTATTTTGTCGAGTTTCTTAGAAAGAGTTGCCT 27044 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCT 232 || || ||| |||||||||||||| |||||| Sbjct 27045 CGCACTCCTAAGTATTCTCTACCTACCCACCT 27076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694226692299