Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq25763 96.9 4e-18 seq25729 93.3 4e-17 seq25691 86.0 7e-15 seq25567 84.2 2e-14 seq25277 82.4 8e-14 seq25707 78.8 1e-12 seq25650 77.0 3e-12 >seq25763 Length=163161 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 112768 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 112826 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 112827 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 112884 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 112885 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 112930 Score = 96.9 bits (106), Expect = 4e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 140045 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 139987 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 139986 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 139929 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 139928 TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 139883 >seq25729 Length=1329538 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 44478 TAAGGAACTCAGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGG 44419 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || |||| || ||| |||||||| |||||||||||| || Sbjct 44418 G--GTCGCAGTGACTAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 44371 >seq25691 Length=910092 Score = 86.0 bits (94), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTTAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || || | ||||| Sbjct 86046 AAACCGACACAAGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCT-TTAAG 86104 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| ||||| | ||| |||||||| ||| || |||| ||| | || ||| ||| | Sbjct 86105 GAACTCAGCAAAATAGCCCCGTAACTTCAGGAGAAGGGGTGCCTCCTCACAAAGGGG--G 86162 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 |||| || ||| || ||| |||||||| ||||||||||| || ||| || Sbjct 86163 TTGCAGTGACCAGGCCCGGGCGACTGTTTACTAAAAACACAGGTCTCTGCAAA 86215 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 62822 TAAGGAACTCAGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 62765 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || || |||||||| |||||||||||| || Sbjct 62764 GGGGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCT 62715 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | || | |||||| ||| || |||| ||| | || ||| || Sbjct 38423 TAAGGAACTCGACAAAATAGCCTCGGAACTTCAGGAGAAGGGGTGCCTCCTCACAAAGGG 38482 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 38483 G--GTCGCAGTGACCAGGCCCGGGCTACTGTTTACCAAAAACACAGGTCT 38530 >seq25567 Length=417175 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||| | ||| || |||| ||| | || ||| || Sbjct 367672 TAAGGAACTCGGCAAAATAGCCCCGTAACTACAGGAGAAGGGGTGCCTCCTCACAAAGGG 367731 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | || || || ||| || |||||||||||| |||||||||||| || Sbjct 367732 G--GTCGTAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCT 367779 >seq25277 Length=160818 Score = 82.4 bits (90), Expect = 8e-14 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || |||| || | | | |||| Sbjct 113978 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGTGAGACAA-CTCTCTCTAAG 113920 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| | |||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 113919 GAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 113862 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || ||| || || | |||||| ||||||||||| || Sbjct 113861 TCGCAGTGACCAGGCCCGGGTGATTGTTTACTAAAAACACAGGTCT 113816 >seq25707 Length=1105073 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | | | |||||||||||| || |||| ||| | || ||| | Sbjct 340627 TAAGGAACTCGGCAAAATAGCTCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 340684 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||| | || || ||| || || |||||||| |||||||||||| || Sbjct 340685 GAGGTCACAATGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 340734 >seq25650 Length=670143 Score = 77.0 bits (84), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| ||||| | |||||||||||||| | || | || ||| ||| ||| | Sbjct 159432 TAAGGAACTCAGCAAAATAGCCCTGTAACTTCGGAAGAAGGCGTGCCTCTCCACAAA--G 159375 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAG 185 | || |||| || ||| || ||||||||| || ||||||||||| Sbjct 159374 GGGGTTGCAGTGACCAGGCCCGGGCAACTGTATACCAAAAACACAG 159329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531067423602