Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq25763 87.8 2e-15 seq25567 87.8 2e-15 seq25691 84.2 2e-14 seq25277 78.8 9e-13 seq25602 75.2 1e-11 >seq25763 Length=163161 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 112883 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 112942 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 112943 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 112988 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 139930 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 139871 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 139870 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 139825 >seq25567 Length=417175 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| || |||||||| |||||||||| ||| ||||| || Sbjct 367732 GGTCGTAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 367791 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| ||||||||||||||| Sbjct 367792 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 367837 >seq25691 Length=910092 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 62762 GGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 62703 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||| ||||| |||||||||||| || Sbjct 62702 AAGACCATGTATGGGGCCTGACGCTTGCCCAGTGCCGGAAGGTCAA 62657 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| || |||||||| |||||||||| ||| ||||| || Sbjct 38483 GGTCGCAGTGACCAGGCCCGGGCTACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 38542 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||||||||| |||||||||||| || Sbjct 38543 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCGGAAGGTCAA 38588 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| ||||||||||| ||||||||| | ||| | || Sbjct 86171 ACCAGGCCCGGGCGACTGTTTACTAAAAACACAGGTCTCTGCAAAGTTGTAAGACCATGT 86230 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||| ||| ||| |||||||||||| || Sbjct 86231 ATGGGGGCTGACACCTACCCAGTGCCGGAAGGTCAA 86266 Score = 75.2 bits (82), Expect = 1e-11 Identities = 81/106 (76%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| | ||||||||| ||||||||||| |||| |||| | Sbjct 167224 GGTCGCAGTGACCAGGCCCGGGTGACTGTTTACTAAAAACACAG-TCTCTACAAAGTTGT 167166 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||| ||||||| |||||||||||| || Sbjct 167165 AAGACCATGTATGGGGGCTGACTCCTGCCCAGTGCCGGAAGGTCAA 167120 >seq25277 Length=160818 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| | || |||||| ||||||||||| ||| ||||| || Sbjct 113863 GGTCGCAGTGACCAGGCCCGGGTGATTGTTTACTAAAAACACAGGTCTCCGCAAAGTCGT 113804 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||||||||| |||||||||||| || Sbjct 113803 AAGACCATGTATGGGGGCTGACGCCTGCCTAGTGCCGGAAGGTCAA 113758 >seq25602 Length=512129 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||| ||| | |||||||||| | |||||||| |||| |||| || ||| | || Sbjct 472118 ACCAAGCCCTAGTGACTGTTTATAATAAACACAGGTCTCTACAAAGTCGTAAGACCATGT 472059 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| |||||||||||| || Sbjct 472058 ATTGGGGATGACGCCTGCCCAGTGCCGGAAGGTCAA 472023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476681000703