Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq25763 107 2e-21 seq25691 98.7 1e-18 seq25567 93.3 5e-17 seq25729 89.7 6e-16 seq25594 89.7 6e-16 seq25762 87.8 2e-15 seq25516 77.0 4e-12 seq25651 75.2 1e-11 >seq25763 Length=163161 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 113203 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 113144 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 113143 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 113085 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 113084 ACAAGGAATTTCGCTACCTTAGGACCGTTA 113055 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 139610 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 139669 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 139670 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 139728 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 139729 ACAAGGAATTTCGCTACCTTAGGACCGTTA 139758 >seq25691 Length=910092 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 166905 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGAGATGTCTATTTCACCGAG 166964 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||||| | | |||||||||| Sbjct 166965 C-CTCTCTCCGAGACAGTGCCCAGATCATTACGCCTTTCGTGCAGATTGAAACTTACCCG 167023 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 167024 ACAAGGAATTTCGCTACCTTAGGACCGTTA 167053 Score = 93.3 bits (102), Expect = 5e-17 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGN 101 || |||| | |||||||||| || | | ||||||| |||| | | | |||||||| Sbjct 38785 GCAGGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCTGAGACAGT 38727 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||| ||||| |||||||||||||||||||||||||||| Sbjct 38726 GCCCAAATCGTTACGCCTTTCGTGCGGGTCGAAACTTACCCGACAAGGAATTTCGCTACC 38667 Query 162 TTAGGACCGTTA 173 ||| |||||||| Sbjct 38666 TTAAGACCGTTA 38655 Score = 77.0 bits (84), Expect = 4e-12 Identities = 106/150 (71%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| | |||| || || ||||||| || | | ||||||| ||| Sbjct 86481 GGGTCTTTTTGTCCAGGTGGAGGTAGTCCGCGTCTTCACAGACATGTCTATTTCACCGAG 86422 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||| || ||| || ||| ||| |||||||||||| | Sbjct 86421 C-CTCTCTCCGAGATAGTGCCCAGATCGTTACGCCTTTCATGCGCGTCGGAACTTACTTG 86363 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 86362 ACAAGGAATTTCGCTACCTTAGGACTGTTA 86333 Score = 75.2 bits (82), Expect = 1e-11 Identities = 50/56 (89%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 ||| || ||||||| ||||||||||||||| | ||| ||||||||||||||||||| Sbjct 62530 TACGCCTTTCGTGCGGGTCGGAACTTACCCAATAAGAAATTTCGCTACCTTAGGAC 62585 >seq25567 Length=417175 Score = 93.3 bits (102), Expect = 5e-17 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 26 GGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGC 85 ||||||| |||| || |||| || |||||||||| || | | ||||||| |||| Sbjct 368051 GGTCTTTATGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC 367992 Query 86 TCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | | |||||| ||| || ||||||| ||||||||||||||||| Sbjct 367991 -CTCTCTCCGAGACAATGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGA 367933 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||| ||||||||||||||||| |||| Sbjct 367932 CAAGGACTTTCGCTACCTTAGGACTGTTA 367904 >seq25729 Length=1329538 Score = 89.7 bits (98), Expect = 6e-16 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || | |||||||| || | | |||||||| | | || | |||| || Sbjct 36720 GGTACTCCGGATCTTCACAGAGAATTCAATTTCATCGGGTCCATGTCGGAGATAGCGGGG 36779 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 36780 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 36839 Query 166 GACCGTTA 173 ||| |||| Sbjct 36840 GACAGTTA 36847 >seq25594 Length=490491 Score = 89.7 bits (98), Expect = 6e-16 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 193348 TTTGTGCAGGTCGAAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 193295 >seq25762 Length=4693355 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1168048 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTATCTTAGGACCGCT 1168107 Query 173 A 173 | Sbjct 1168108 A 1168108 >seq25516 Length=344126 Score = 77.0 bits (84), Expect = 4e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 || || |||| |||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 312744 CCTTTTGTGCGGGTCAAAACTTACCCGACAAGGAATTTCGCTACCTCAGGACCGTTA 312688 >seq25651 Length=670733 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||| ||||||||||||||| ||||| | |||||||||||||||| |||||||| ||| Sbjct 509853 TACAACATTCGTGCAGGTCGTTACTTATACAACAAGGAATTTCGCTATCTTAGGACAGTT 509794 Query 173 A 173 | Sbjct 509793 A 509793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547063430337