Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq23875 123 2e-26 seq25763 122 7e-26 seq25634 114 1e-23 seq25742 113 4e-23 seq25453 109 5e-22 seq25691 102 7e-20 seq25230 91.5 1e-16 seq25407 82.4 6e-14 seq25760 75.2 9e-12 seq25656 75.2 9e-12 >seq23875 Length=5797 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 3006 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 3064 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 3065 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 3124 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 3125 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 3164 >seq25763 Length=163161 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 108499 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 108440 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 108439 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 108380 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 108379 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 108340 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 144314 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 144373 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 144374 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 144433 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 144434 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 144473 >seq25634 Length=602113 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | Sbjct 468426 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTATAG 468368 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 468367 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 468308 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||| ||||||| || | |||| Sbjct 468307 GCGGACTTGACGTCATCCCCACTTTCCTCCAGTATATCAC 468268 >seq25742 Length=1610859 Score = 113 bits (124), Expect = 4e-23 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||| | ||| | ||| ||| ||| ||||||| ||||||| Sbjct 714930 CGAGTTGCAGCCTGCAATCTGAACTGAGGATGGGTTTT-TGGAGTTAGCTCACCCTCGCA 714988 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 714989 GGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 715048 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||| | || |||| Sbjct 715049 TGATGACTTGACGTCATCCTCACCTTCCTCCCGCTTATCAC 715089 >seq25453 Length=276081 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||| || Sbjct 208074 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGTGG 208133 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||| | |||| |||||||| ||| Sbjct 208134 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGCGTCGCCCAGGGCATAAGGGGCAT 208193 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||| || || |||| Sbjct 208194 GATGACTTGACGTCATCCTCACCTTCCTCTGGCTTATCAC 208233 >seq25691 Length=910092 Score = 102 bits (112), Expect = 7e-20 Identities = 120/162 (74%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACT----ACGATACACTTTCTGGGATTAGCTCCCCCTCG 58 ||||||||| || |||| || ||| ||| | ||||||| ||||||| |||||| Sbjct 171574 GAGTTGCAGCCTGCAATTCGAACTGAGGACGGT----TTTCTGGAGTTAGCTCACCCTCG 171629 Query 59 CGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGC 118 ||| | ||| |||| ||| ||||| || ||||||| |||| |||||||| Sbjct 171630 TGGGATCGCGACCCTTTGTCCCGGCCATTATAGCACGTGTGTCGCCCAGGGCATAAGGGG 171689 Query 119 CATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 ||||| || |||||||||||| ||||||||||| | || ||| Sbjct 171690 CATGATGATTTGACGTCATCCTCACCTTCCTCCAGCTTATCA 171731 >seq25230 Length=141786 Score = 91.5 bits (100), Expect = 1e-16 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||| ||| | ||| ||| ||||||| |||| |||| Sbjct 74874 CGAGTTGCAGCCTGCAATCTAAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTTGCGG 74933 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| || |||| |||| ||||| || ||| Sbjct 74934 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACATGTGTCGCCCAGGGCATAAAGGGCAT 74993 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTC 159 || ||||||||||||||| ||||||||| ||| || || Sbjct 74994 GATGACTTGACGTCATCCTCACCTTCCTTCGGCTTATC 75031 >seq25407 Length=242243 Score = 82.4 bits (90), Expect = 6e-14 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 ||||| || || ||||| | ||| | | ||| ||| ||||||| |||| || | Sbjct 179085 AGTTGTAGCCTGCAATCTGAACTGAGGACGAGTTTTTGGAGTTAGCTCACCCTTGCAAGA 179144 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | ||| |||| ||| |||||||| || |||| |||| ||||| || ||||| Sbjct 179145 TTGCGACCCTTTGTCCCGGCCATTGTAGCACATGTGTCGCCCAGGGCATAAAGGGCATGA 179204 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||| | |||||||||| || || |||| Sbjct 179205 TGACTTGACGTCATTCTCACCTTCCTCGGGCTTATCAC 179242 >seq25760 Length=3792821 Score = 75.2 bits (82), Expect = 9e-12 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 ||||||| |||| |||| | ||| |||| ||| ||| |||| ||||||| ||| Sbjct 2130495 TTAGCTCACCCTTACGGGATCGCGACCCTTTGTCCCGGCCACTGTAGCACGTGTGTCGCC 2130436 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGG 153 | |||||| | ||||| || |||||||||| | ||||||||||||| Sbjct 2130435 CAGGGCATAAGAGGCATGATGATTTGACGTCATTCTCACCTTCCTCCGG 2130387 >seq25656 Length=683670 Score = 75.2 bits (82), Expect = 9e-12 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| | |||| ||| || |||| |||| || |||||| ||||| ||||||||||| Sbjct 72214 TGTAATTGCCATCGTAGCACATGTGTGGCCCAGCCTATAAGGTCCATGCGGACTTGACGT 72155 Query 135 CATCCCCACCTTCCTC 150 |||||||||||||||| Sbjct 72154 CATCCCCACCTTCCTC 72139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415896175110