Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq25763 87.8 1e-15 seq25675 84.2 2e-14 seq25691 82.4 5e-14 seq25277 82.4 5e-14 seq25602 75.2 8e-12 seq25567 75.2 8e-12 seq25126 75.2 8e-12 seq25733 73.4 3e-11 seq25707 73.4 3e-11 seq25565 71.6 1e-10 >seq25763 Length=163161 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 113580 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 113521 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 113520 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 113463 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || Sbjct 139233 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 139292 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 139293 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 139350 >seq25675 Length=768031 Score = 84.2 bits (92), Expect = 2e-14 Identities = 92/121 (76%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC---CGGATCACTATGAC 57 || |||||||||||||||||| |||||||||| || | ||| |||||||||| | | Sbjct 766968 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTC---GGCACTGTCGGATCACTAAGGC 767024 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 767025 CGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 767084 Query 118 T 118 | Sbjct 767085 T 767085 >seq25691 Length=910092 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||| |||||||||||||| |||||||||| || || |||||||||| | || Sbjct 166528 TAACTTGTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 166587 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 166588 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 166645 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | | Sbjct 62065 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGACACCGTCGGATCACTAAGCTCGA 62124 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||||| |||||| | || | ||| ||| |||||| | ||| | || ||||||| Sbjct 62125 CTTTCATCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTACCTTTGCACT 62182 >seq25277 Length=160818 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | ||||||||||| || || ||||||| | || Sbjct 113166 TAACTTTTATCCGTTGAGCGACGACCCTTCCATTCGGCACCGTCGAATCACTAAGGCCGA 113225 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 113226 CTTTCGTCCCTGCTCAACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 113283 >seq25602 Length=512129 Score = 75.2 bits (82), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC---CGGATCACTATGAC 57 || |||||||||||||||||||| | ||||| || | ||| ||||||| || | | Sbjct 471431 TAACTTTTATCCGTTGAGCGATGCTCTTTCCACTC---GGCACTGTCGGATCATTAAGGC 471487 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | |||||| ||||||| | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 471488 CAACTTTCGTCTCTGCTCGACGGGTGGGTCTTGCACTCAAGCTCCCTTCTGCCTTTGCAC 471547 Query 118 T 118 | Sbjct 471548 T 471548 >seq25567 Length=417175 Score = 75.2 bits (82), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCAC---CGGATCACTATGAC 57 || |||||||||||||||||| | |||||||| ||| ||| |||||||||| | | Sbjct 368429 TAACTTTTATCCGTTGAGCGACGACCCTTCCA---CTAGGCACTGTCGGATCACTAAGGC 368373 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 | ||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 368372 CGACTTTCATCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 368313 Query 118 T 118 | Sbjct 368312 T 368312 >seq25126 Length=103231 Score = 75.2 bits (82), Expect = 8e-12 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | |||||||| || ||| || |||| || | || Sbjct 24005 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGCGCCGTCGAATCAGTAAGGCCGA 23946 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTG 114 |||||| ||||||| | || | ||| || |||||| | |||||||| ||| Sbjct 23945 CTTTCGTCTCTGCTCGACGGGTGGGTCTTACAGTCAAGCTCCCTTTTGCCTTTG 23892 >seq25733 Length=1382611 Score = 73.4 bits (80), Expect = 3e-11 Identities = 81/108 (75%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 11 CCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCTTTCGCATC 70 ||||||||||| |||||||||| || || |||||||||| | || |||||| | Sbjct 545967 CCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCC 545908 Query 71 TGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 ||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 545907 TGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 545860 >seq25707 Length=1105073 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/118 (74%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| | |||||||| || || |||||||||| | | Sbjct 341384 TAACTTTTATCCGTTGAGCGACGACCCTTCCACTCGGCACCGTCGGATCACTAAGGCTGA 341325 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| || ||| | || | ||| | | |||||| | ||| |||||||||||| Sbjct 341324 CTTTCGTCCCTACTCGATGGGTGGGTCTTGTAGTCAAGCTCCCTTCTGCCATTGCACT 341267 >seq25565 Length=414040 Score = 71.6 bits (78), Expect = 1e-10 Identities = 86/116 (74%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 5 TTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCG---GATCACTATGACCTGC 61 ||||||||||||||||| | |||||||| || | ||||| |||||||| | || | Sbjct 258828 TTTTATCCGTTGAGCGACGACCCTTCCACTC---GGCACCGTCAGATCACTAAGGCCGAC 258884 Query 62 TTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 ||||| |||||| | || | ||| | | |||||| | ||| |||| |||||| Sbjct 258885 TTTCGTCCCTGCTCGACGGGTGGGTCTTGTAGTCAAGCTCCCTTCTGCCTTTGCAC 258940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351914982100