Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq25749 131 2e-28 seq304 131 2e-28 seq205 131 2e-28 seq25710 125 7e-27 seq25694 114 1e-23 seq25362 114 1e-23 seq24578 114 1e-23 seq25560 113 5e-23 seq25735 109 6e-22 seq25567 109 6e-22 seq25437 104 2e-20 seq25729 100 3e-19 seq25290 84.2 2e-14 seq15828 82.4 8e-14 seq25105 80.6 3e-13 >seq25749 Length=1851721 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 1851476 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1851417 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 1851416 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 1851359 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1851358 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1851299 Query 190 T 190 | Sbjct 1851298 T 1851298 Score = 118 bits (130), Expect = 1e-24 Identities = 138/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| |||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 891772 CTGTTACTTTGAAGAAATTAGACTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 891831 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 891832 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 891889 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | |||||| ||| |||| || |||| |||||||||||||||||||| Sbjct 891890 TTAACAGGGACACTCGGGGCATTCA-TATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 891948 Query 190 T 190 | Sbjct 891949 T 891949 >seq304 Length=565 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 539 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 480 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 479 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 422 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 421 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 362 Query 190 T 190 | Sbjct 361 T 361 >seq205 Length=465 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 351 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 292 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 291 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 234 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 233 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 174 Query 190 T 190 | Sbjct 173 T 173 >seq25710 Length=1134645 Score = 125 bits (138), Expect = 7e-27 Identities = 139/179 (78%), Gaps = 5/179 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||||| Sbjct 376130 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 376189 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131 |||| | |||||| | ||| ||||| ||| || ||| ||| || |||||||| Sbjct 376190 ATAACATCATAGGATTTT-GGTCCTATTCTGTTAGCCTTCG-GGATCGGA-GTAATGATT 376246 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 376247 AACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 376305 Score = 80.6 bits (88), Expect = 3e-13 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | ||| ||||| ||| || | ||| Sbjct 433401 ATACATTAGCATGGGATAACATCATAGGATTTT-GGTCCTATTCTGTTGGCCTTCGGGAT 433459 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||| ||| Sbjct 433460 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTAAAA 433518 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 433519 TTCTTGGATTTAT 433531 >seq25694 Length=956611 Score = 114 bits (126), Expect = 1e-23 Identities = 140/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||||| | |||||||| |||| |||| | |||||| Sbjct 76588 CCAGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAT 76647 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || ||||| |||| | |||| | | | || ||||| ||| || | ||| || | Sbjct 76648 TAGCATGGGATAACATCATAGAATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCGGA-G 76705 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| || | ||| |||| |||| | ||||| || || | |||||||||||||| Sbjct 76706 TAATGATTAACAGGGACAGTCAGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTG 76765 Query 184 GATTTAT 190 ||||||| Sbjct 76766 GATTTAT 76772 >seq25362 Length=205865 Score = 114 bits (126), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||| ||||| | | |||||| |||| |||| | |||||||| | Sbjct 45200 ACTGTTACTTTGAAGAAACTAGAGTGCTTAAAGCAAGCCTACGCTCTGTATACATTAGCC 45259 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | | || ||||| ||| || | ||| || |||||| Sbjct 45260 TGGGATAACATCATAGGATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATG 45317 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||||||||||||| | ||||| || |||| |||||||||||||||||| Sbjct 45318 ATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGTGGTGAAATTCTTGGATTT 45377 Query 189 AT 190 || Sbjct 45378 AT 45379 >seq24578 Length=20454 Score = 114 bits (126), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| || | |||||||| ||| Sbjct 9042 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTTTGTATACATTAGCAT 8983 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | |||| | ||||| | Sbjct 8982 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCAGGATCAGA-GTAATCA 8925 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 8924 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 8866 >seq25560 Length=409355 Score = 113 bits (124), Expect = 5e-23 Identities = 136/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 251818 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGTATACATTAGCAT 251759 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | || || || ||| || | ||| || ||||||| Sbjct 251758 GGGATAACATCATAGGATTT-CAGTCCTGTTCTGTTGGCCTTCGGGATCGAA-GTAATGA 251701 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | |||| || |||| |||||||||||||||||||| Sbjct 251700 TTAACAAGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 251641 Query 190 T 190 | Sbjct 251640 T 251640 >seq25735 Length=1471502 Score = 109 bits (120), Expect = 6e-22 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | | |||||| |||| ||||| | ||||||||| || Sbjct 386319 CTATTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGCCTATGCTCTGTATACATTAC-AT 386261 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | ||| ||||||| | || || ||||| ||||||| Sbjct 386260 GGGATAACATCATAGGATTTT-GGTCCTATTTTATTGGCTTTCGGGACCAGA-GTAATGA 386203 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | || || | || |||| || |||| |||| ||||||||||||||| Sbjct 386202 TTAACAGGGACAATCAGGAGCATCCATATTTCATAGTCAGAGGTAAAATTCTTGGATTTA 386143 Query 190 T 190 | Sbjct 386142 T 386142 >seq25567 Length=417175 Score = 109 bits (120), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | ||||| || |||| |||| | |||||||| ||| Sbjct 244460 CTGTTACTTTGAAGAAATTAGAGTGCTCAAACCAAGCCTACGCTCTGTATACATTAGCAT 244519 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | || ||||| | | || | |||| || ||||||| Sbjct 244520 GGGATAACATCATAGGATTT-CAGTCCTATTCTTTTGGCCTTCAGGATCGAA-GTAATGA 244577 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||| | | | ||||| || || | |||| ||||||||||||||| Sbjct 244578 TTAACAGGGATAGTCGAGAGCATTTGTATTTCATAGTTAGAGGTAAAATTCTTGGATTTA 244637 Query 190 T 190 | Sbjct 244638 T 244638 >seq25437 Length=263430 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||||||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 47208 CTGTTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 47149 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || |||||| ||| || | ||| | |||||| Sbjct 47148 GGGATAAAATCATAGGA-TTTTGGGTCTATTCTGTTGGCCTTCGGGATC-AGAATAATGA 47091 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| |||| |||| | |||| || || | ||||||||||||| |||||| Sbjct 47090 TTAACAAGGACAGTCAGGGGCATTCATATTTCATAGTTAGAGGTGAAATTCTTAGATTTA 47031 Query 190 T 190 | Sbjct 47030 T 47030 >seq25729 Length=1329538 Score = 100 bits (110), Expect = 3e-19 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | | ||||| ||| Sbjct 855949 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTACTCATTAGCAT 856008 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||| || | | || ||||| ||| || | ||| | ||||||| Sbjct 856009 GGGATAACATCATAAGATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCAGA-GTAATGA 856066 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| |||| |||| | ||||| || |||| |||||||||||||||||||| Sbjct 856067 TTAACAGGGA-AGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 856125 Query 190 T 190 | Sbjct 856126 T 856126 >seq25290 Length=168267 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||||||| || | ||| Sbjct 130733 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTTTGTTGGCCTTCGGGAT 130675 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||| ||||| | ||||| || |||| |||| ||| Sbjct 130674 CGGA-GTAATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTCAGAGGTTAAA 130616 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 130615 TTCTTGGATTTAT 130603 >seq15828 Length=1227 Score = 82.4 bits (90), Expect = 8e-14 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121 |||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| || Sbjct 352 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 294 Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181 |||||||| || | ||| ||||||||| | ||||| || |||| |||||||||||| Sbjct 293 -GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCT 235 Query 182 TGGATTTAT 190 ||||||||| Sbjct 234 TGGATTTAT 226 >seq25105 Length=100449 Score = 80.6 bits (88), Expect = 3e-13 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||| | |||| | |||||| | |||| ||||| ||| || | | ||| Sbjct 62609 ATACATTAGCATTGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTTGGGAT 62551 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||| ||||| | ||||| || || | |||||||| Sbjct 62550 CGGA-GTAATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTGAGAGGTGAAA 62492 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 62491 TTCTTGGATTTAT 62479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511872215520