Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07]
25,763 sequences; 350,621,860 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq25749 131 2e-28
seq304 131 2e-28
seq205 131 2e-28
seq25710 125 7e-27
seq25694 114 1e-23
seq25362 114 1e-23
seq24578 114 1e-23
seq25560 113 5e-23
seq25735 109 6e-22
seq25567 109 6e-22
seq25437 104 2e-20
seq25729 100 3e-19
seq25290 84.2 2e-14
seq15828 82.4 8e-14
seq25105 80.6 3e-13
>seq25749
Length=1851721
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 1851476 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1851417
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 1851416 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 1851359
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 1851358 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1851299
Query 190 T 190
|
Sbjct 1851298 T 1851298
Score = 118 bits (130), Expect = 1e-24
Identities = 138/181 (76%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| |||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 891772 CTGTTACTTTGAAGAAATTAGACTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 891831
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 891832 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 891889
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| | |||||| ||| |||| || |||| ||||||||||||||||||||
Sbjct 891890 TTAACAGGGACACTCGGGGCATTCA-TATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 891948
Query 190 T 190
|
Sbjct 891949 T 891949
>seq304
Length=565
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 539 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 480
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 479 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 422
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 421 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 362
Query 190 T 190
|
Sbjct 361 T 361
>seq205
Length=465
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 351 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 292
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 291 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 234
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 233 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 174
Query 190 T 190
|
Sbjct 173 T 173
>seq25710
Length=1134645
Score = 125 bits (138), Expect = 7e-27
Identities = 139/179 (78%), Gaps = 5/179 (3%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72
|||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||||
Sbjct 376130 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGG 376189
Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGT-AGGTTTCTAGGACCGCCCGTAATGATA 131
|||| | |||||| | ||| ||||| ||| || ||| ||| || ||||||||
Sbjct 376190 ATAACATCATAGGATTTT-GGTCCTATTCTGTTAGCCTTCG-GGATCGGA-GTAATGATT 376246
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| | ||| ||||||||| | ||||| || |||| |||||||||||||||||||||
Sbjct 376247 AACAAGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 376305
Score = 80.6 bits (88), Expect = 3e-13
Identities = 99/133 (74%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | ||| ||||| ||| || | |||
Sbjct 433401 ATACATTAGCATGGGATAACATCATAGGATTTT-GGTCCTATTCTGTTGGCCTTCGGGAT 433459
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||||||||| | ||||| || |||| |||| |||
Sbjct 433460 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTAAAA 433518
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 433519 TTCTTGGATTTAT 433531
>seq25694
Length=956611
Score = 114 bits (126), Expect = 1e-23
Identities = 140/187 (75%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63
|||| || |||||||||| ||||||||| | |||||||| |||| |||| | ||||||
Sbjct 76588 CCAGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAT 76647
Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123
|| ||||| |||| | |||| | | | || ||||| ||| || | ||| || |
Sbjct 76648 TAGCATGGGATAACATCATAGAATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCGGA-G 76705
Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183
||||||| || | ||| |||| |||| | ||||| || || | ||||||||||||||
Sbjct 76706 TAATGATTAACAGGGACAGTCAGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTG 76765
Query 184 GATTTAT 190
|||||||
Sbjct 76766 GATTTAT 76772
>seq25362
Length=205865
Score = 114 bits (126), Expect = 1e-23
Identities = 137/182 (75%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| ||| ||||| | | |||||| |||| |||| | |||||||| |
Sbjct 45200 ACTGTTACTTTGAAGAAACTAGAGTGCTTAAAGCAAGCCTACGCTCTGTATACATTAGCC 45259
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||| |||| | |||||| | | || ||||| ||| || | ||| || ||||||
Sbjct 45260 TGGGATAACATCATAGGATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATG 45317
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||||||||||||| | ||||| || |||| ||||||||||||||||||
Sbjct 45318 ATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGTGGTGAAATTCTTGGATTT 45377
Query 189 AT 190
||
Sbjct 45378 AT 45379
>seq24578
Length=20454
Score = 114 bits (126), Expect = 1e-23
Identities = 135/179 (75%), Gaps = 3/179 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| || | |||||||| |||
Sbjct 9042 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTTTGTATACATTAGCAT 8983
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | |||| | ||||| |
Sbjct 8982 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCAGGATCAGA-GTAATCA 8925
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
| || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 8924 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 8866
>seq25560
Length=409355
Score = 113 bits (124), Expect = 5e-23
Identities = 136/181 (75%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| |||
Sbjct 251818 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTTTGTATACATTAGCAT 251759
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | | || || || ||| || | ||| || |||||||
Sbjct 251758 GGGATAACATCATAGGATTT-CAGTCCTGTTCTGTTGGCCTTCGGGATCGAA-GTAATGA 251701
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | |||| || |||| ||||||||||||||||||||
Sbjct 251700 TTAACAAGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 251641
Query 190 T 190
|
Sbjct 251640 T 251640
>seq25735
Length=1471502
Score = 109 bits (120), Expect = 6e-22
Identities = 136/181 (75%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | | |||||| |||| ||||| | ||||||||| ||
Sbjct 386319 CTATTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGCCTATGCTCTGTATACATTAC-AT 386261
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | ||| ||||||| | || || ||||| |||||||
Sbjct 386260 GGGATAACATCATAGGATTTT-GGTCCTATTTTATTGGCTTTCGGGACCAGA-GTAATGA 386203
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| | || || | || |||| || |||| |||| |||||||||||||||
Sbjct 386202 TTAACAGGGACAATCAGGAGCATCCATATTTCATAGTCAGAGGTAAAATTCTTGGATTTA 386143
Query 190 T 190
|
Sbjct 386142 T 386142
>seq25567
Length=417175
Score = 109 bits (120), Expect = 6e-22
Identities = 135/181 (75%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | ||||| || |||| |||| | |||||||| |||
Sbjct 244460 CTGTTACTTTGAAGAAATTAGAGTGCTCAAACCAAGCCTACGCTCTGTATACATTAGCAT 244519
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | | || ||||| | | || | |||| || |||||||
Sbjct 244520 GGGATAACATCATAGGATTT-CAGTCCTATTCTTTTGGCCTTCAGGATCGAA-GTAATGA 244577
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||||||||| | | | ||||| || || | |||| |||||||||||||||
Sbjct 244578 TTAACAGGGATAGTCGAGAGCATTTGTATTTCATAGTTAGAGGTAAAATTCTTGGATTTA 244637
Query 190 T 190
|
Sbjct 244638 T 244638
>seq25437
Length=263430
Score = 104 bits (114), Expect = 2e-20
Identities = 134/181 (74%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||||||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 47208 CTGTTACTTTGAAAAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 47149
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || |||||| ||| || | ||| | ||||||
Sbjct 47148 GGGATAAAATCATAGGA-TTTTGGGTCTATTCTGTTGGCCTTCGGGATC-AGAATAATGA 47091
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| |||| |||| | |||| || || | ||||||||||||| ||||||
Sbjct 47090 TTAACAAGGACAGTCAGGGGCATTCATATTTCATAGTTAGAGGTGAAATTCTTAGATTTA 47031
Query 190 T 190
|
Sbjct 47030 T 47030
>seq25729
Length=1329538
Score = 100 bits (110), Expect = 3e-19
Identities = 134/181 (74%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | | ||||| |||
Sbjct 855949 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTACTCATTAGCAT 856008
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | ||| || | | || ||||| ||| || | ||| | |||||||
Sbjct 856009 GGGATAACATCATAAGATTT-CAGTCCTATTCTGTTGGCCTTCGGGATCAGA-GTAATGA 856066
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| |||| |||| | ||||| || |||| ||||||||||||||||||||
Sbjct 856067 TTAACAGGGA-AGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 856125
Query 190 T 190
|
Sbjct 856126 T 856126
>seq25290
Length=168267
Score = 84.2 bits (92), Expect = 2e-14
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | |||| ||||||||| || | |||
Sbjct 130733 ATACATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTTTGTTGGCCTTCGGGAT 130675
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||| ||||| | ||||| || |||| |||| |||
Sbjct 130674 CGGA-GTAATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTCAGAGGTTAAA 130616
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 130615 TTCTTGGATTTAT 130603
>seq15828
Length=1227
Score = 82.4 bits (90), Expect = 8e-14
Identities = 97/129 (75%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 62 ATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC 121
|||| ||||| |||| | |||||| | |||| ||||| ||| || | ||| ||
Sbjct 352 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 294
Query 122 CGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCT 181
|||||||| || | ||| ||||||||| | ||||| || |||| ||||||||||||
Sbjct 293 -GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCT 235
Query 182 TGGATTTAT 190
|||||||||
Sbjct 234 TGGATTTAT 226
>seq25105
Length=100449
Score = 80.6 bits (88), Expect = 3e-13
Identities = 99/133 (74%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||| | |||| | |||||| | |||| ||||| ||| || | | |||
Sbjct 62609 ATACATTAGCATTGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTTGGGAT 62551
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||| ||||| | ||||| || || | ||||||||
Sbjct 62550 CGGA-GTAATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTGAGAGGTGAAA 62492
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 62491 TTCTTGGATTTAT 62479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511872215520
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