Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq25763 123 5e-26 seq25691 120 6e-25 seq25277 120 6e-25 seq25603 98.7 2e-18 seq25567 86.0 1e-14 seq25707 77.0 6e-12 seq23426 77.0 6e-12 seq18262 77.0 6e-12 seq25754 75.2 2e-11 seq25718 75.2 2e-11 seq25571 75.2 2e-11 >seq25763 Length=163161 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 111145 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 111204 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 111205 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 111257 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 111258 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 111314 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 111315 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 111374 Query 249 CCT 251 ||| Sbjct 111375 CCT 111377 Score = 123 bits (136), Expect = 5e-26 Identities = 176/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 141668 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 141609 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 141608 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 141556 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 141555 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 141499 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 141498 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 141439 Query 249 CCT 251 ||| Sbjct 141438 CCT 141436 >seq25691 Length=910092 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||||| ||||||| ||| | ||| | || Sbjct 168930 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCAGG 168871 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | ||| || ||||| |||||| || |||| ||| Sbjct 168870 GAGTT-GAAAATAAGCATAGATTCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 168818 Query 130 CATTGCATGCTGAATACATAGGTATGCAAA-GCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | ||||| | ||| ||||||||||||||||| ||| Sbjct 168817 C--TGC-TGCTGAATCCATGGGCAGGCAAAAGACAACCTGGCGAACTGAAACATCTTAGT 168761 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 || ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 168760 GACTAAAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 168701 Query 249 CCT 251 ||| Sbjct 168700 CCT 168698 Score = 89.7 bits (98), Expect = 9e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 ||| |||| ||| || | |||| || ||| |||||||||||||||| |||| | | Sbjct 64384 TGCCGAATCCATGGGCAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGTAACCAGA 64325 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | |||||| ||||| |||||||||||||||| ||||| Sbjct 64324 GGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 64269 >seq25277 Length=160818 Score = 120 bits (132), Expect = 6e-25 Identities = 179/248 (72%), Gaps = 17/248 (7%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGC- 66 || |||||| ||| ||| | || ||| ||||| ||||||| |||| ||| ||| Sbjct 115600 ATAGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAA---GCGACAAGATGCT 115544 Query 67 --GGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT 124 ||||||| | ||| | | | |||||| ||||||| |||| || |||| || Sbjct 115543 TTGGGGAGTT-GAAAATAAGCGTAGATCCGGAGATTTCTGAATAGGTCAACC------TT 115491 Query 125 TGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATC 183 | ||||| |||||||| ||| || | |||| || ||| |||||||||||||||| Sbjct 115490 TCAA--ATTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATC 115434 Query 184 TAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGG 243 | |||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||| Sbjct 115433 TTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCAGCGAGCGAAATGGG 115374 Query 244 ATGAGCCT 251 | ||||| Sbjct 115373 AGCAGCCT 115366 >seq25603 Length=512767 Score = 98.7 bits (108), Expect = 2e-18 Identities = 173/246 (70%), Gaps = 17/246 (7%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA---GCTGC 66 ||| ||| ||| ||| | || ||| ||||| ||||||| ||||| | ||| | Sbjct 38472 GGTTGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAA---GCGATGAAATGCTTC 38416 Query 67 GGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG 126 || |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 38415 GGAGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTC 38363 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | ||| |||||||| ||| || | |||| || ||| |||||||| |||||||| Sbjct 38362 AAAC--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTAAAACATCTT 38306 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAT 245 |||| || || |||||||| ||| | ||||||| ||||| |||||||||||||| Sbjct 38305 AGTAACTAGAGAAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCAACGAGCGAAATGGGAG 38246 Query 246 GAGCCT 251 ||||| Sbjct 38245 CAGCCT 38240 >seq25567 Length=417175 Score = 86.0 bits (94), Expect = 1e-14 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||| || | |||| || ||| ||| || |||||||||| |||| | ||| Sbjct 366113 CTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAATTGAAACATCTTAGTAACCAGAGG 366172 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||| ||| | ||||||| ||||| ||| |||||||||||| ||||| Sbjct 366173 AAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCCAGCGAAATGGGAGCAGCCT 366226 >seq25707 Length=1105073 Score = 77.0 bits (84), Expect = 6e-12 Identities = 89/118 (75%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| || | |||| || ||| || |||||||||||||| |||| || | Sbjct 321203 TGCTAAATCCATGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAACTAGA 321262 Query 196 GGAAAA--GAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||| ||| ||||||||| ||||| |||| ||||||||| ||||| Sbjct 321263 GGAAAAAGAAAAGCAAAAGAGATTCCCTTAGTAGCAACGAGTGAAATGGGAGTAGCCT 321320 >seq23426 Length=3421 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 372 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 313 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 312 GGCGAGCGAGAGCGGAT 296 >seq18262 Length=1384 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 831 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 772 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 771 GGCGAGCGAGAGCGGAT 755 >seq25754 Length=2373262 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| ||| ||| ||||||||| |||| | | Sbjct 316120 TGCTGAATCCATGGGCAAGCAAGAGACAACCTGGCAAACCGAAACATCTTAGTAACCAGA 316179 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| ||||| ||| || ||||||||| ||||| Sbjct 316180 GGAAAAGAAAGCAAAAGCGATTCATGTAGTAGCGGCAAGTGAAATGGGAGTAGCCT 316235 >seq25718 Length=1223348 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || ||||| || || | |||| || ||| || || | |||||||| |||| || | Sbjct 224760 TGTTGAATCGATGGGCAGGCAAGAGACAACCTGGTAAAATAAAACATCTTAGTAACTAGA 224701 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| ||||| |||||||||||| ||| ||||| Sbjct 224700 GGAAAAGAAAGCAAAGGCGATTCCCGTAGTAGCGGCGAGCGAAATAGGAGCAGCCT 224645 >seq25571 Length=426073 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 |||||| |||||||||| |||| | || |||| ||| ||| | |||| ||| ||||| Sbjct 403823 GGCGAATTGAAACATCTTAGTAACCAGAGAAAAAAAAAGCAAAAGCGATTTCCATAGTAG 403764 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 403763 CGGCGAGCGAAATGGGAGCAGCCT 403740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918163392608