Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq25763 127 4e-27 seq25742 116 8e-24 seq25246 116 8e-24 seq23875 116 8e-24 seq25691 105 1e-20 seq25567 104 5e-20 seq24201 96.9 7e-18 seq25391 93.3 9e-17 seq25707 78.8 2e-12 seq25570 77.0 7e-12 >seq25763 Length=163161 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 107702 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 107654 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 107653 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 107601 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 107600 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 107541 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 107540 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 107481 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 107480 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 107442 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 145111 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 145159 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 145160 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 145212 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 145213 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 145272 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 145273 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 145332 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 145333 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 145371 >seq25742 Length=1610859 Score = 116 bits (128), Expect = 8e-24 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 |||||| | || |||||||||| || | | |||| ||||| ||| ||||| | | || Sbjct 715757 TTATTCTCCTAGAAAAGAAGTTCACGACCTGTAGG-CCTTCTACCTCCACGCGGCATTGC 715815 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | |||| || ||| |||||| || ||||| ||||||||||||||||||| || ||| Sbjct 715816 TCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGCGTCTGG 715875 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCT 248 ||||||||||| | | ||||| || | ||||||| || ||| ||| | | || Sbjct 715876 GCCGTGTCTCAGGCCTAGTGTGGCTGATCATCCTCTCGGACTAGCTACTGATCATCGCCT 715935 Query 249 AGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| || || || | || |||||||||| Sbjct 715936 TGGTAAGCTATTGCCTCACCAACTACCTAAT 715966 >seq25246 Length=146716 Score = 116 bits (128), Expect = 8e-24 Identities = 150/206 (73%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || ||| ||||| ||| ||||| | | || |||| || Sbjct 130410 AAAAGAAGTTCACGACCCTTAGG-CCTTCTACCTCCACGCGGCATTACTCTGTCAGGCTT 130352 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||| ||||| ||| ||| ||||||||||| Sbjct 130351 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCTCGTAGAAGTCTGGGCCGTGTCTCAG 130292 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 ||| | ||||| || | |||||||||| | ||| ||| | | || ||| || || Sbjct 130291 TTCTAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 130232 Query 261 ACCCCGCCTACTACCTAATGGAACGC 286 || | || |||| ||||| | |||| Sbjct 130231 GCCTCACCAACTAGCTAATCGGACGC 130206 >seq23875 Length=5797 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 4243 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 4302 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 4303 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 4362 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 4363 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 4422 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 4423 GCAGGCTCATCAAACAGCG 4441 >seq25691 Length=910092 Score = 105 bits (116), Expect = 1e-20 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || ||| | || | ||| ||||| | | ||| |||| || Sbjct 172431 AAAAGAAGTTCACGACCCATAGGCCTTTTA-CCTCCACGCGGCATTGCTCCATCAGGCTT 172489 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||||||||||| ||| ||||||||||| Sbjct 172490 TCGCCCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 172549 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| ||||| || | |||| || || Sbjct 172550 TCCCAGTGTGGCTGATCATCCTGTCGGA 172577 Score = 95.1 bits (104), Expect = 3e-17 Identities = 141/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||||| ||||| ||| || || || | ||| |||| || Sbjct 75683 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCATGCGACATTGCTCCGTCAGGCTT 75741 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| | |||| || |||| |||||||||||| |||| |||| | | || |||||||| Sbjct 75742 TCGCCAATTGCGGAAAATTCTCCACTGCTGCCTCGCGTAAGAGTCTAGGCCATGTCTCAG 75801 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| || | | || ||| || || Sbjct 75802 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATTATCGCCTTGGTAAGCTATT 75861 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 75862 GCCTCACCAACTAGCTAAT 75880 >seq25567 Length=417175 Score = 104 bits (114), Expect = 5e-20 Identities = 143/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | ||||| ||||| ||| ||| | | ||| ||| || Sbjct 363103 AAAAGAAGTTCACGACTCGTAGG-CCTTCTCCCTCTACGTGGCATTGCTCCGTCAAGCTT 363045 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||||||||||||||||| ||| ||||||||||| Sbjct 363044 TCGCCCATTGCGAAAAATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 362985 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | | ||||| || | ||||||| || | |||| ||| | | || ||| || || Sbjct 362984 TCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTATTGATCATCGCCTTGGTAAGCTATT 362925 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 362924 GCCTCACCAACTAGCTAAT 362906 >seq24201 Length=9598 Score = 96.9 bits (106), Expect = 7e-18 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 170 GCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAA 229 ||||||||||||||| ||| |||||||||||| ||| ||||| || | |||||||| Sbjct 9598 GCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGT 9539 Query 230 CCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATC 289 | |||| ||||| | || |||| ||| ||||| | || |||| ||||| |||||| Sbjct 9538 CGGCTATGTATCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATACAACGCAGG 9479 Query 290 CCCATC 295 ||||| Sbjct 9478 TCCATC 9473 >seq25391 Length=225660 Score = 93.3 bits (102), Expect = 9e-17 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||||| ||||| ||| ||||| | ||| ||| || Sbjct 91345 AAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGCGGTATTGCTCCGTCAAGCTT 91287 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| | |||| || ||||| || |||||||||| |||||||||||| ||||||||||| Sbjct 91286 TCGCCAATTGCGAAAAATTCCCCATTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAG 91227 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | | | ||||| || | || |||| || Sbjct 91226 TCCTAGTGTGGCTGATCATCTTCTCGGA 91199 >seq25707 Length=1105073 Score = 78.8 bits (86), Expect = 2e-12 Identities = 107/148 (72%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || ||| ||||| ||| ||| | | | ||| |||| || Sbjct 309703 AAAAGAAGTTCACGACCCATAGG-CCTTCTACCTCCACACGGCATTGCTCCGTCAGGCTT 309761 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| || | | || |||| ||| ||| ||| ||||||||||| Sbjct 309762 TCGCCCATTGCGGAAAATTCCCCATTACCGCATCCCTTAGAAGTCTGGGCCGTGTCTCAG 309821 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | | | ||||| || | |||| ||||| Sbjct 309822 TCCTAGTGTGGCTGATCATCCTTTCAGA 309849 >seq25570 Length=424000 Score = 77.0 bits (84), Expect = 7e-12 Identities = 108/149 (72%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | ||||||| ||||| ||| || || | | ||| | || || Sbjct 402864 AAAAGAAGTTCATGACCCGTAGA-CCTTCTACCTCCATGCAGCATTGCTCTGTAAGGCTT 402922 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGA-CCGTGTCTCA 199 ||| ||||| || |||| |||||| ||||| ||||||| ||| |||||||||| Sbjct 402923 TCGCCCATTACAAAAAATTCTCCACTGCCACCTCCTCTAGGAGTCTGGGGCCGTGTCTCA 402982 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || | | ||||| || | |||||||||| Sbjct 402983 GTCCTAGTGTGGCTGATCATCCTCTCAGA 403011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068524645056