Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq25760 183 2e-41 >seq25760 Length=3792821 Score = 183 bits (202), Expect = 2e-41 Identities = 570/872 (65%), Gaps = 14/872 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || || |||||| ||||||||||| || ||||| || || | Sbjct 708482 TGTTCCCAATCCAATACCCAGAAATTTGGGAAATGTACAAAAAAGCCGAAGCATCATTTT 708423 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| ||||| || ||| | || |||| | | ||||||| || | || Sbjct 708422 GGACGGCAGAGGAAGTGGATCTCTCTCAAGATCTCCGTCACTGGGAATCCCTAACTCCCG 708363 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 |||| | || ||||| || || | || ||||| ||||| || |||||||||||| Sbjct 708362 ATGAAAAGCACTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCC 708303 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 ||| || | | ||||| | | ||||| |||||| | ||||||||| ||||| Sbjct 708302 TTGAAAACCTCGCCGGCCGTTTTATGAAAGAGGTTCAAGTGGCTGAGGCGCGTGCTTTCT 708243 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||| ||||| || || || ||||| ||||||| || |||||| | || | | || | Sbjct 708242 ACGGTTTCCAAATCGCTATTGAGAACATCCACTCTGAAATGTACTCTCTTTTGTTGGAGA 708183 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 | || |||| || ||| | || ||||| | || ||||||||| | || Sbjct 708182 CTTATATCAAAGACTCCAATGAAAAGAACCGTTTGTTTCACGCTATCGAGACGGTTCC-- 708125 Query 61424 CGGTGAAGCG--GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATT 61481 | |||| ||||||||| ||||| || || ||||| | | ||| | || Sbjct 708124 TTGCATAGCGAAGAAAGCGGAGTGGGCTTTGAAATGGATAGACGG---CTCGGAATCTTT 708068 Query 61482 TGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 || ||| | |||| | || || || || || || | || ||| |||| || Sbjct 708067 TGCTGAGAGGATT-ATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 708009 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 ||| || |||||| | || || ||||| | ||||| |||||||| || || |||| Sbjct 708008 GCGCGATATTTTGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGT 707949 Query 61601 TGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATC 61660 | || ||||| || |||||| | || || ||||| || |||| ||| | | || | Sbjct 707948 TAATCTCACGAGATGAGGGCTTACACTGCGATTTCGCGTGTTTG--ATTTACAGTCTGT- 707892 Query 61661 TGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCG 61720 | ||| | |||||||| ||| | || || || || ||||| | |||| Sbjct 707891 TAAAGAAAAAATTGAGTGAGGAGCGCGTGAAGGGAATAGTGCGAGATGCGGTGAACATCG 707832 Query 61721 AACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAA 61780 | ||| ||| | |||||| | || | | | | || |||||| | | ||| Sbjct 707831 AGAGGGAGTTTGTATGTGACGCGCTTCCTTGCGCGTTGGTGGGGATGAATGGGGAGTTAA 707772 Query 61781 TGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-GGTCGATTTGGGTATGAAGCGG 61839 || ||||||||||| |||||||| ||| | |||| ||| |||||| | || Sbjct 707771 TGAGTCAGTATATTGAGTTTGTTGCAGACAGGTTGTTGGGTGCGCTTGGGTGCGGCAAGG 707712 Query 61840 ATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACG 61899 | |||||| | ||| || ||||||| ||||| ||||| | | || ||||| Sbjct 707711 A-GTATAATGTGTCAAATCCTTTTGATTGGATGGAGCTGATTAGTTTACAAGGGAAGACT 707653 Query 61900 AATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||||||| ||||| | || || || ||||| Sbjct 707652 AATTTTTTTGAGAAGAGAGTTGGAGAGTATCA 707621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443168990320