Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq16533 105 2e-18 >seq16533 Length=1266 Score = 105 bits (116), Expect = 2e-18 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 28964 ACATGTTACGTGAAGCCATCGGTGGCCTTGCCTCCCGCCCGGAAGGGTTTGTGGTGTATA 29023 ||||| | | || |||| || ||||| || || || || || || |||||| | || Sbjct 1105 ACATGCTGCTGGAGGCCACGGGCGGCCTCGCATCGCGGCCCGAGGGCTTTGTGATCTACG 1046 Query 29024 CGACCACCCAGTCGAATGAACCTCCCGCCGGGGTGTTCAGACAGAAACT-GCAGTACGCC 29082 ||||||| |||||| | || ||||| ||||| ||||||| | || || ||| |||||| Sbjct 1045 CGACCACGCAGTCGGAGGAGCCTCCTGCCGGCGTGTTCAAGGACAAGCTCGCA-TACGCC 987 Query 29083 CGGGATGTGCGCGACGGCAAAATTCATGATCCGCACTTTCTGCCGGTGATCTTTGAA 29139 || | |||||||||||| | || | |||| | | || |||||| |||||| |||| Sbjct 986 CGAGGTGTGCGCGACGGGGAGATCGAGGATCAGAAGTTCCTGCCGCTGATCTATGAA 930 Score = 89.7 bits (98), Expect = 2e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 29731 GAAGCCGGGATCCCCGACGGAATTG-TGGTGGGGATAAGCCAGGGCTGGAAACTGGGCGG 29789 || |||||||||||||| ||||||| | | || || |||||||||||| || || Sbjct 332 GACGCCGGGATCCCCGA-GGAATTGATCATCGGCATCTCCCAGGGCTGGAAGCTCACGGG 274 Query 29790 GGCCATTAAAACCACCGAGCGCAAACTGGCTGAAGGGGTGCTGGTGCATGGTGACCAGCC 29849 ||||| | | |||||| |||| || ||| || || | | ||||| Sbjct 273 CGCCATGGCCGTCGCAGAGCGCGGCCTGGAGGACGGGAGCCTCACCCACGCCGCGCAGCC 214 Query 29850 CCTGATGGCCTGGTGTGTCGGCAATGCCCGGGTGGAGCCTAAAGGTAACGCCATTCTTAT 29909 || ||||||||||| || ||||| || ||| ||||| || || || ||| || || Sbjct 213 GCTCATGGCCTGGTGCGTGGGCAACGCGAAGGTAGAGCCCAAGGGCAATGCCTCGCTGAT 154 Query 29910 CACCAAACAGGCCAGTGGACGGGGAAAAATTGACCCGCTGATGGCGCTGTTCAATGCGGT 29969 || ||||| ||||| || | ||| || || ||||| |||||| | |||| ||||| Sbjct 153 TACGAAACAAGCCAGCGGCTCCGCAAAGATCGATCCGCTCATGGCGTCGCTCAACGCGGT 94 Query 29970 CTCCCTGATGTCCCTTAACCCGGAACCG 29997 | |||||| | |||||| || || Sbjct 93 GACGCTGATGGCGACCAACCCGCAAGCG 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175491894347148