Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7896 349 5e-94 seq839 273 3e-71 seq811 185 1e-44 seq7290 156 6e-36 seq263993 141 1e-31 seq917 109 8e-22 >seq7896 Length=19876 Score = 349 bits (386), Expect = 5e-94 Identities = 211/220 (96%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| | Sbjct 7352 GTACAAAGAGCAGGGACGTAGTCAACACGAGCT-GATGACTCGCGCTTACTAGGAATT-C 7295 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 7294 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACAATGAAATTTCAAAGATTA 7235 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 7234 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGAGG 7175 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||||||||||||||||||| Sbjct 7174 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 7135 >seq839 Length=95879 Score = 273 bits (302), Expect = 3e-71 Identities = 176/191 (92%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGG 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9411 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGG 9470 Query 126 ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAG 185 ||||||||| |||| |||||||||||||||| | ||||||||| ||||||||||||| Sbjct 9471 GCCTGTCGGCTAAGGCTATAGACTCGTTGAATATGTTAGTGTAGCGAGCGTGCGGCCCAG 9530 Query 186 AACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT 245 ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct 9531 AACATCTAAGGGCATCATAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAGCGGCCAT 9590 Query 246 -CTCCCTCGAA 255 |||||| || Sbjct 9591 AGTCCCTCTAA 9601 >seq811 Length=97684 Score = 185 bits (204), Expect = 1e-44 Identities = 109/111 (98%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 33193 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 33136 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33135 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 33085 >seq7290 Length=21712 Score = 156 bits (172), Expect = 6e-36 Identities = 110/123 (89%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||| |||||| |||||||||| |||||| ||| ||||||||||||||| | Sbjct 7197 GTACAAAGAGCAAGGACGTCATCAACGCGAG-TTGATGGCTCACGCTTACTAGGAATT-C 7140 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||||||||||| |||||||||||||| |||||| |||||||||||||||||| Sbjct 7139 CTCGTTAAAGACCAACAACTGCAATGATCTATCGTCATCACCATGAAATTTCAAAGATTA 7080 Query 121 CCC 123 ||| Sbjct 7079 CCC 7077 >seq263993 Length=216 Score = 141 bits (156), Expect = 1e-31 Identities = 86/91 (95%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGAT 185 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACT 149 ||||||| | |||||||| | || ||||||| Sbjct 186 TACCCGGGCTTGTCGGCCTAAGTTATAGACT 216 >seq917 Length=92174 Score = 109 bits (120), Expect = 8e-22 Identities = 129/170 (76%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 53 GGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTC 112 ||||||| || ||||| ||| |||||||||| | |||| || | | | |||||| Sbjct 90468 GGAATTTT-TCATTGAAAACCGACAATTGCAACATTTTATCTT-ATGATGGTAAAATTTT 90411 Query 113 AAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 ||||||||| | |||||| | |||| || | || ||||| |||||||||| ||| Sbjct 90410 AAAGATTACTCAGACCTGAAGAGCAAGACTATGGGCTTGTTGA-TACATCAGTG---CGC 90355 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 || |||||| |||| || ||||||||| | |||||||||||||||| || Sbjct 90354 GCATGCGGCGTAGAATATATAAGGGCATTAAAGACCTGTTATTGCCTTAA 90305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749757152480