Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq839 125 4e-27 seq81025 122 5e-26 seq512 111 9e-23 seq298 111 9e-23 >seq839 Length=95879 Score = 125 bits (138), Expect = 4e-27 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || ||||||| || Sbjct 9877 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCTGCC 9936 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| |||| ||||| |||| |||||| ||||||||||||| |||||||| Sbjct 9937 GATCCCTGGTCAGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATAGTCTTCGA 9993 >seq81025 Length=688 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||| ||||| ||||||||||||| |||||||||| ||||| || ||||||| | Sbjct 77 GAATCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGTAACATCCGCA 136 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||| ||||||||||||||| Sbjct 137 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTGTCTGATCGTCTTCGA 193 >seq512 Length=118443 Score = 111 bits (122), Expect = 9e-23 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| ||||||| ||| ||||| || |||||||| ||| Sbjct 107934 AACCCAAAAACTTTGATTTCTCATAAGGTGTCGACGGAGTCCTAAAAATAACATCCGCCG 107875 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||||| |||| |||| |||||| || | |||| ||||||||||| Sbjct 107874 ATCCCTGTTCGGCATCATTTATGGTTGAGACTAAGATGATATCCAATCGTCTTCGA 107819 >seq298 Length=144948 Score = 111 bits (122), Expect = 9e-23 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||| ||||||||||||| ||||||| | | ||||| || |||||||| ||| Sbjct 11696 AACCCAAAAACTTTGATTTCTCATAAGGTGTCAACGGAGTCCTAAAAATAACATCCACCG 11755 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||||| |||| |||| |||||| || | ||||| ||||||||||| Sbjct 11756 ATCCCTGTTCGGCATCATTTATGGTTGAGACTAAGATGATATCTAATCGTCTTCGA 11811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277596454080