Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq81025 221 2e-55
seq839 208 1e-51
seq554 95.1 2e-17
seq512 80.6 5e-13
seq298 75.2 2e-11
>seq81025
Length=688
Score = 221 bits (244), Expect = 2e-55
Identities = 200/248 (81%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 440 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 381
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| || || |||||| | ||| | ||||||||
Sbjct 380 GGGATAACATCATAGGATTT-CGGTCCTGTTCTGTTGGCCTTCGGGATCAGAGTAATGAT 322
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||||||||||||| | |||| || ||||||||| ||||||||||||||||
Sbjct 321 TAACAGGGATAGTCGGGGGCATTCATATTTCATAGTCAGAGGTAAAATTCTTGGATTTAT 262
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
|||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 261 GAAAGATGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 203
Query 311 GTTAGGGG 318
||| ||||
Sbjct 202 GTTGGGGG 195
>seq839
Length=95879
Score = 208 bits (230), Expect = 1e-51
Identities = 198/248 (80%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 10239 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 10180
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||| ||||| | ||| || ||||||||
Sbjct 10179 GGGATAACATCATAGGATTT-CGGTCTTATACTGTTGCCCTTCGGGATCGGAGTAATGAT 10121
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| ||||||||| | ||||| | ||||||| ||||||||||||||||||
Sbjct 10120 TAACAGGGACAGTCGGGGGCATTCGTATTTCACAGTCAGAG-TGAAATTCTTGGATTTAT 10062
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||| ||||||||||||||||| ||||||||
Sbjct 10061 GAAAGACGAACAACTGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACGAAA 10003
Query 311 GTTAGGGG 318
||| ||||
Sbjct 10002 GTTGGGGG 9995
>seq554
Length=114263
Score = 95.1 bits (104), Expect = 2e-17
Identities = 126/168 (75%), Gaps = 8/168 (5%)
Strand=Plus/Minus
Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TT--GCTC-GAATACATT 125
||| |||||||||| ||||||||||| |||||||| || | || |||| | |||||||
Sbjct 76928 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCTTAATTACGCTCTGGATACATT 76869
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGT 184
|||||| |||| | |||||| | | || |||| | |||| ||| ||| || ||
Sbjct 76868 AGCATGAGATAACATCATAGGA-TTTCAGTCATATTCTATTGGCCTTCGAGG-TCGGAGT 76811
Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGG 232
|||||||| ||||| ||| ||||| | ||||| || ||||||||
Sbjct 76810 CATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTCAGAGG 76763
>seq512
Length=118443
Score = 80.6 bits (88), Expect = 5e-13
Identities = 81/103 (79%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || ||||| |||||||||||| |||||| | || ||| |||| |||| |
Sbjct 107717 GTATTTTATAGTCAG--GTGAAATTCTTGAATTTATGAACGATGAACAACTGTGAAAACA 107774
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317
|| |||| |||||||||||||||||| || | |||||| |||
Sbjct 107775 TTTGCCAATGATGTTTTCATTAATCAG-GATCAAAAGTTGGGG 107816
>seq298
Length=144948
Score = 75.2 bits (82), Expect = 2e-11
Identities = 82/104 (79%), Gaps = 5/104 (5%)
Strand=Plus/Minus
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA-GACTAACTACTGCGAAAGC 273
||||| || ||||| |||||||||||| |||| ||||| || ||| ||||| ||| |
Sbjct 11913 GTATTTTATAGTCAG--GTGAAATTCTTGAATTT-TTGAACGATGAACAACTGCAAAAAC 11857
Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317
|| ||| ||||||||||||||||| || | ||||||||||
Sbjct 11856 ATTTGCCAGTGATGTTTTCATTAATCA-AGATCAAAAGTTAGGG 11814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 912382355456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |