Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq81025 221 2e-55 seq839 208 1e-51 seq554 95.1 2e-17 seq512 80.6 5e-13 seq298 75.2 2e-11 >seq81025 Length=688 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 440 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 381 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| || || |||||| | ||| | |||||||| Sbjct 380 GGGATAACATCATAGGATTT-CGGTCCTGTTCTGTTGGCCTTCGGGATCAGAGTAATGAT 322 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||||||||||||| | |||| || ||||||||| |||||||||||||||| Sbjct 321 TAACAGGGATAGTCGGGGGCATTCATATTTCATAGTCAGAGGTAAAATTCTTGGATTTAT 262 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 261 GAAAGATGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 203 Query 311 GTTAGGGG 318 ||| |||| Sbjct 202 GTTGGGGG 195 >seq839 Length=95879 Score = 208 bits (230), Expect = 1e-51 Identities = 198/248 (80%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 10239 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 10180 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||| ||||| | ||| || |||||||| Sbjct 10179 GGGATAACATCATAGGATTT-CGGTCTTATACTGTTGCCCTTCGGGATCGGAGTAATGAT 10121 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| | ||||||| |||||||||||||||||| Sbjct 10120 TAACAGGGACAGTCGGGGGCATTCGTATTTCACAGTCAGAG-TGAAATTCTTGGATTTAT 10062 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||| ||||||||||||||||| |||||||| Sbjct 10061 GAAAGACGAACAACTGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACGAAA 10003 Query 311 GTTAGGGG 318 ||| |||| Sbjct 10002 GTTGGGGG 9995 >seq554 Length=114263 Score = 95.1 bits (104), Expect = 2e-17 Identities = 126/168 (75%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TT--GCTC-GAATACATT 125 ||| |||||||||| ||||||||||| |||||||| || | || |||| | ||||||| Sbjct 76928 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCTTAATTACGCTCTGGATACATT 76869 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG-TTTCTAGGACCGCCGT 184 |||||| |||| | |||||| | | || |||| | |||| ||| ||| || || Sbjct 76868 AGCATGAGATAACATCATAGGA-TTTCAGTCATATTCTATTGGCCTTCGAGG-TCGGAGT 76811 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGG 232 |||||||| ||||| ||| ||||| | ||||| || |||||||| Sbjct 76810 CATGATTAACAGGGACAGTGGGGGGCATTTGTATTTCATAGTCAGAGG 76763 >seq512 Length=118443 Score = 80.6 bits (88), Expect = 5e-13 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||| |||||||||||| |||||| | || ||| |||| |||| | Sbjct 107717 GTATTTTATAGTCAG--GTGAAATTCTTGAATTTATGAACGATGAACAACTGTGAAAACA 107774 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 || |||| |||||||||||||||||| || | |||||| ||| Sbjct 107775 TTTGCCAATGATGTTTTCATTAATCAG-GATCAAAAGTTGGGG 107816 >seq298 Length=144948 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA-GACTAACTACTGCGAAAGC 273 ||||| || ||||| |||||||||||| |||| ||||| || ||| ||||| ||| | Sbjct 11913 GTATTTTATAGTCAG--GTGAAATTCTTGAATTT-TTGAACGATGAACAACTGCAAAAAC 11857 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGG 317 || ||| ||||||||||||||||| || | |||||||||| Sbjct 11856 ATTTGCCAGTGATGTTTTCATTAATCA-AGATCAAAAGTTAGGG 11814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912382355456