Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq839 167 1e-38 seq718 118 4e-24 seq6711 107 8e-21 seq5717 107 8e-21 seq5395 80.6 1e-12 >seq839 Length=95879 Score = 167 bits (184), Expect = 1e-38 Identities = 151/189 (80%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 496 GGGAACCCGT-GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 |||| ||| | | ||||||||| | || || | |||| | | || || || |||| Sbjct 5464 GGGATCCCTTTGCGGGTGCACCGCCAACAGACCTTGATCTTCTGAGAAGGGTTCGAGTGT 5405 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 5404 GAGCATGCATGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAG 5345 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||||||||||||||| ||||||| | ||| ||||||||||| || | | ||||||| Sbjct 5344 GAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTCCGCCTGACTTGGGTA 5285 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 5284 TAGGGGCGA 5276 >seq718 Length=102528 Score = 118 bits (130), Expect = 4e-24 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | |||| |||| || |||||||||| ||| || ||| ||| ||||||||| Sbjct 11370 CCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTCAGGATCCGAAAGAT 11311 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||| |||| |||| ||||||||| |||| ||||||| ||||||| ||||||| | Sbjct 11310 GGTGAAATATGGCTGAGCTGGGTGAAGCTAGAGTAAACTCTAGTGGAGGTTCGCAGCTAT 11251 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | | |||||| | ||| | ||| |||||||||| Sbjct 11250 ACTAACATTCAAATCATTTGTCTGACTTGAGTATAGGGGC 11211 >seq6711 Length=23441 Score = 107 bits (118), Expect = 8e-21 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 || |||||| || ||| | |||| |||| || |||||||||| ||| || ||| Sbjct 7686 GGTTGCACCGCTGATCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTC 7745 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||| |||||||||||| |||| || | |||||||| |||| ||||||| |||| Sbjct 7746 AGGACCCAAAAGATGGTGAAATATGGCTTAGCTAGGTGAAGCTAGAGTAAACTCTAGTGG 7805 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || ||||||| | || | | |||||| | ||| | ||| |||||||||| Sbjct 7806 AGCTTCGCAGCTATACTAACATTCAAATCATTTGTCTGACTTGAGTATAGGGGC 7859 >seq5717 Length=27305 Score = 107 bits (118), Expect = 8e-21 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 || |||||| || ||| | |||| |||| || |||||||||| ||| || ||| Sbjct 23753 GGTTGCACCGCTGATCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTC 23694 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||| |||||||||||| |||| || | ||||||||| |||| ||||||| |||| Sbjct 23693 AGGACCCAAAAGATGGTGAAATATGGCTTAGCTGGGTGAAGCTAGAGTAAACTCTAGTGG 23634 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 ||| || |||| | || | |||||| | ||| | ||| |||||||||| Sbjct 23633 AGGTTCACAGCTATACTAAAGATCAAATCATTTGTCTGACTTGAGTATAGGGGC 23580 >seq5395 Length=28830 Score = 80.6 bits (88), Expect = 1e-12 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 22672 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGTGGTAAATTCCGTCCAAGGC 22731 Query 95 TAAATATTGGCCAGAGACC 113 |||||| ||| ||||||| Sbjct 22732 TAAATACAGGCAAGAGACC 22750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073396145600