Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq839 167 1e-38
seq718 118 4e-24
seq6711 107 8e-21
seq5717 107 8e-21
seq5395 80.6 1e-12
>seq839
Length=95879
Score = 167 bits (184), Expect = 1e-38
Identities = 151/189 (80%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 496 GGGAACCCGT-GAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554
|||| ||| | | ||||||||| | || || | |||| | | || || || ||||
Sbjct 5464 GGGATCCCTTTGCGGGTGCACCGCCAACAGACCTTGATCTTCTGAGAAGGGTTCGAGTGT 5405
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
|||||| ||| |||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 5404 GAGCATGCATGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAG 5345
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||||||||||||||||| ||||||| | ||| ||||||||||| || | | |||||||
Sbjct 5344 GAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTCCGCCTGACTTGGGTA 5285
Query 675 TAGGGGCGA 683
|||||||||
Sbjct 5284 TAGGGGCGA 5276
>seq718
Length=102528
Score = 118 bits (130), Expect = 4e-24
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581
|||| | |||| |||| || |||||||||| ||| || ||| ||| |||||||||
Sbjct 11370 CCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTCAGGATCCGAAAGAT 11311
Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641
|||||| |||| |||| ||||||||| |||| ||||||| ||||||| ||||||| |
Sbjct 11310 GGTGAAATATGGCTGAGCTGGGTGAAGCTAGAGTAAACTCTAGTGGAGGTTCGCAGCTAT 11251
Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| | | |||||| | ||| | ||| ||||||||||
Sbjct 11250 ACTAACATTCAAATCATTTGTCTGACTTGAGTATAGGGGC 11211
>seq6711
Length=23441
Score = 107 bits (118), Expect = 8e-21
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567
|| |||||| || ||| | |||| |||| || |||||||||| ||| || |||
Sbjct 7686 GGTTGCACCGCTGATCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTC 7745
Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627
|||||| |||||||||||| |||| || | |||||||| |||| ||||||| ||||
Sbjct 7746 AGGACCCAAAAGATGGTGAAATATGGCTTAGCTAGGTGAAGCTAGAGTAAACTCTAGTGG 7805
Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| ||||||| | || | | |||||| | ||| | ||| ||||||||||
Sbjct 7806 AGCTTCGCAGCTATACTAACATTCAAATCATTTGTCTGACTTGAGTATAGGGGC 7859
>seq5717
Length=27305
Score = 107 bits (118), Expect = 8e-21
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567
|| |||||| || ||| | |||| |||| || |||||||||| ||| || |||
Sbjct 23753 GGTTGCACCGCTGATCGACCTTGATCTCTTGAGAAGGATTTGAGTGTGAGTATGTTTGTC 23694
Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627
|||||| |||||||||||| |||| || | ||||||||| |||| ||||||| ||||
Sbjct 23693 AGGACCCAAAAGATGGTGAAATATGGCTTAGCTGGGTGAAGCTAGAGTAAACTCTAGTGG 23634
Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
||| || |||| | || | |||||| | ||| | ||| ||||||||||
Sbjct 23633 AGGTTCACAGCTATACTAAAGATCAAATCATTTGTCTGACTTGAGTATAGGGGC 23580
>seq5395
Length=28830
Score = 80.6 bits (88), Expect = 1e-12
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || ||
Sbjct 22672 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGTGGTAAATTCCGTCCAAGGC 22731
Query 95 TAAATATTGGCCAGAGACC 113
|||||| ||| |||||||
Sbjct 22732 TAAATACAGGCAAGAGACC 22750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2073396145600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |