Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq4906 217 4e-54 seq3447 163 7e-38 seq7991 107 5e-21 seq17567 105 2e-20 seq12648 105 2e-20 seq6320 105 2e-20 seq73673 98.7 3e-18 seq3132 89.7 1e-15 seq2355 86.0 2e-14 seq19579 80.6 7e-13 seq3337 78.8 2e-12 >seq4906 Length=31215 Score = 217 bits (240), Expect = 4e-54 Identities = 294/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 1824 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 1765 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| | ||||||||||| || | ||| || | | |||| | | || Sbjct 1764 AAGCGTTATCATGAATGATTGGGCGTAAAGAGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 1705 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||||||||| ||| | | | ||| | || |||| | || Sbjct 1704 CAAATCCCAGGGCTTAACCCTGGACAGGTGGTGGAAACTACCAAGCTGGAGTACGGTAGG 1645 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 1644 GGCAGAGGGAATTTTCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 1585 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||| |||| | Sbjct 1584 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAACAAATGG 1525 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| |||| | | | Sbjct 1524 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGTTGTGCGTGTCGA 1465 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || || ||||||||||||| |||| || |||||||| ||| Sbjct 1464 TCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCTCCTGGGGAGTAC 1416 >seq3447 Length=41424 Score = 163 bits (180), Expect = 7e-38 Identities = 287/419 (68%), Gaps = 13/419 (3%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCA-----------GCAGCCGCGGTAAT 51 || ||| ||||||||| ||||||||| ||||||| |||||| | ||||| Sbjct 10974 TATCTGGGGAATAAGCATCGGCTAACTCCGTGCCAACTCCATGCCAGCAGCCACAGTAAT 10915 Query 52 ACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGT 111 || ||| ||||||||||| ||||| | | || ||||||||| | ||| || | | | Sbjct 10914 ACAGAGGATGCAAGCGTTATCTGGAATGATTAGGTGTAAAGCGTCTGTAGGTGGCTTTTT 10855 Query 112 AAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAG 171 ||| | | ||| |||||| ||||| |||| ||| || | | ||| | || | Sbjct 10854 AAGTCCGCTGTCAAATCCTAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGG 10795 Query 172 AGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGG 231 ||| | || || | |||||| | ||| ||| |||||||||||||| || | | | Sbjct 10794 AGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAG 10735 Query 232 AACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGG 291 ||| |||| |||||| ||| | ||||| |||||||| || | | |||||| || Sbjct 10734 AACTCCAACGGCGAAAGCACTCTACTGGGCCGACACTGACACTGAGAGATGAAAGCTAGG 10675 Query 292 GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTT 351 |||||||| |||||||||||| ||||||| ||| |||| ||| ||||| | | Sbjct 10674 GGAGCAAATGAGATTAGATACCCCAGTAGTCCTAGCCGTAAATGATGGATACTAGGCGCT 10615 Query 352 GGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 | | | | | || || ||||||||||| | |||| ||||||||||| || Sbjct 10614 GTGCGTATCGACCAGTGCAGTGCTGTAGCTAACGCATTAAGTATCCCGCCTGGGGAGTA 10556 >seq7991 Length=19622 Score = 107 bits (118), Expect = 5e-21 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 204 AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATA 263 ||| |||||||||||||| || | | ||||||||| |||||| ||| | ||||| Sbjct 9164 AGCGGTGAAATGCGTAGAGATCAGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 9223 Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 |||||||| | | |||||||| | |||||||| ||||||||||||| ||||||| Sbjct 9224 ACACTGACATTGAGAGACGAAAGCTAGTGGAGCAAATGGGATTAGATACCCCAGTAGTCC 9283 Query 324 ACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAACGTAGCTAA 381 ||| |||||||| ||||| | || | | | || || || |||||||| Sbjct 9284 TAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCAACCCGTGCAGTGCTGTAGCTAA 9343 Query 382 CGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || |||| | ||||||||| ||| Sbjct 9344 CGTGTTAAGTATCCTGCCTGGGGAGTAC 9371 >seq17567 Length=6860 Score = 105 bits (116), Expect = 2e-20 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 204 AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATA 263 ||| || ||||||||||| || | | ||||||||| |||||| ||| | ||||| Sbjct 2817 AGCGGTAAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTACTGGGCCG 2876 Query 264 ACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 323 |||||||| | | |||||||| |||||| ||| ||||||||||||| |||||| Sbjct 2877 ACACTGACATTGAGAGACGAAAGCTAGGGGAGAAAATGGGATTAGATACCCCAGTAGTCA 2936 Query 324 ACGCCCTAAACGATATCAACTAGTTG--TTGGGGATTTACTTCCTTG--GTAACGTAGCT 379 ||| |||||||| ||||| | || | || || || || || |||||| Sbjct 2937 TAGCCGTAAACGATGGATACTAGGCGCTCTGCGTATCGAC--CCATGCAGTGCTGTAGCT 2994 Query 380 AACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||| |||| ||||||||||| ||| Sbjct 2995 AACGCGTTAAGTATCCCGCCTGGGGAGTAC 3024 >seq12648 Length=11425 Score = 105 bits (116), Expect = 2e-20 Identities = 148/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 209 TGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACT 268 ||||||||||||| || | | ||||| ||| ||| || ||| | || || ||||| Sbjct 2303 TGAAATGCGTAGAGATCGGAAAGAACATCAACGGCAAAAGCACTCTGCTAGGCCGACACT 2362 Query 269 GACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCC 328 || || | |||||||| |||||||||| ||||||||||||| ||||||| ||| Sbjct 2363 AACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCC 2422 Query 329 CTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCT-TG--GTAACGTAGCTAACGCG 385 |||||||| ||||| | || | || | | ||| || || |||||||||||| Sbjct 2423 GTAAACGATGGATACTAGGCGATGTGCATAT-CGACCTGTGCAGTGCTGTAGCTAACGCG 2481 Query 386 TGAAGTTGACCGCCTGGGGAATAC 409 | |||| ||||||||||| ||| Sbjct 2482 TTAAGTATCCCGCCTGGGGAGTAC 2505 >seq6320 Length=24830 Score = 105 bits (116), Expect = 2e-20 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| | ||||||| |||||||||||||||||||||| ||| ||| Sbjct 4540 TATCTGGGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 4481 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||| |||||| | |||||||||||||| Sbjct 4480 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGT 4448 >seq73673 Length=787 Score = 98.7 bits (108), Expect = 3e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| ||||||||||||| |||||| ||| ||| ||||| | Sbjct 667 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCTCGGTAAGACGGGGGGGGCAAGTG 608 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 || || |||| ||||||||||||| | || ||||||| Sbjct 607 TTCTTCAGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 569 >seq3132 Length=44694 Score = 89.7 bits (98), Expect = 1e-15 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| |||||||| ||||| |||||||||||||| ||| ||| Sbjct 3189 TATCTGGGGAATAAGCATTGGCTAACTCTATGCCAACAGCCGCGGTAATATAGAGGATGC 3130 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 || ||||| ||||| | ||||||||||| || | ||| || | | |||| | || Sbjct 3129 AAACGTTATCTGGAATGATTGGGCGTAAAGTGTCTGTAGGTGGCTTTTTAAGTCCCCCGT 3070 Query 123 GAAATCCCCGGGCTTAACC 141 |||||| ||||| |||| Sbjct 3069 CCAATCCCAGGGCTGAACC 3051 >seq2355 Length=54213 Score = 86.0 bits (94), Expect = 2e-14 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 256 CTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 315 ||||| |||||||| || | |||||||| |||||||||| ||||||||||||| Sbjct 37905 CTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCC 37964 Query 316 GGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAAC 373 ||||||| ||| |||||||| ||||| | || | | | || || || Sbjct 37965 AGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCT 38024 Query 374 GTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||||||||| |||| ||||||||||| ||| Sbjct 38025 GTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 38060 >seq19579 Length=5662 Score = 80.6 bits (88), Expect = 7e-13 Identities = 112/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 256 CTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 315 ||||| |||||||| || | |||||||| ||||| |||| ||||||||||||| Sbjct 488 CTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAACAAATGGGATTAGATACCCC 429 Query 316 GGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAAC 373 ||||||| ||| |||||||| ||||| | || | | | || || || Sbjct 428 AGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCT 369 Query 374 GTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||||||||| |||| ||||||||||| ||| Sbjct 368 GTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 333 >seq3337 Length=42490 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| || ||||||||||||||||||| ||| ||| Sbjct 7496 TATCTGGGGAATAAGCATCGGCTAACTCTGTACCAGCAGCCGCGGTAATACAGAGGATGC 7555 Query 63 AAGCGTTA 70 |||||||| Sbjct 7556 AAGCGTTA 7563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1285629682688