Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2006 127 3e-27 seq1861 102 1e-19 seq492 102 1e-19 seq750 96.9 5e-18 seq10350 95.1 2e-17 seq662 75.2 2e-11 seq21708 73.4 5e-11 >seq2006 Length=59971 Score = 127 bits (140), Expect = 3e-27 Identities = 174/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| || |||||||||| || |||||| | ||||| | ||| || |||| Sbjct 45378 CCTTCCGGCACTGGACAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 45320 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||| | || || || |||||||| || Sbjct 45319 TGTGTTTTTGGTAAACAGTCACCCCCGCCTGGTCACTGCGACCCCCT------------- 45273 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || ||| |||||||||||||||||||||||||| ||||||| || ||||| Sbjct 45272 TTGTG----AGGAGT--CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCT 45219 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| |||||||||||| | |||||||||||||| | Sbjct 45218 TAGAGAGAGTTGTCTCGCGCCCCTAGTTATTCTCTACCTACCTACCTGTGTCGGTTTCAG 45159 Query 246 GTA 248 ||| Sbjct 45158 GTA 45156 >seq1861 Length=62895 Score = 102 bits (112), Expect = 1e-19 Identities = 169/243 (70%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| ||| || |||||||||| || |||||| | |||| | ||| || |||| Sbjct 27387 CCTTCAGGCACTGGACAGGCGTCAGCCCTCATACATGGTCTTAT-GACTTTGCGGAGACC 27445 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||| | | || || |||||||| | Sbjct 27446 TGTGTTTTTGGTAAACAGTCACC-CGGGCTTGTCACTGCGACCTTCT------------- 27491 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||| | ||||||||| ||||| |||||||||| ||||| Sbjct 27492 TTGTG----AGGAG--GCACCCCTTTTTCCGAAGTTATGGGGCTATTTTGCCGAGTTCCT 27545 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| | |||||||||||||| | Sbjct 27546 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 27605 Query 246 GTA 248 ||| Sbjct 27606 GTA 27608 >seq492 Length=121577 Score = 102 bits (112), Expect = 1e-19 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||| ||||| | |||||| || |||| | | Sbjct 87858 GCACCCCTTCTCCCGAAGTTACGGGGTCATGTTGCCAAGTTCCTTCGACATGGTTCTCTC 87799 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | |||| |||||| |||||| || ||||||||||||||| Sbjct 87798 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 87758 >seq750 Length=101112 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||| || ||||||| || ||||||| | |||| | Sbjct 68294 GGCACCCCTTCTCCCGAAGTTACGGAGCTATTTTGCTGAGTTCCTTAGAGAGAGTTATCT 68235 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| | ||||||||| |||| |||| Sbjct 68234 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCAGTTTCGGGTA 68187 >seq10350 Length=14826 Score = 95.1 bits (104), Expect = 2e-17 Identities = 169/243 (70%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||| | ||||| | ||||||| | ||||| ||| ||| | || Sbjct 4090 CCTTCCAGCACCGGGCATGTGTCAGACTCTATACATTGTGTTACCA-CTTAGCAGAGTCC 4032 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | |||||||| |||||| ||||| ||| || | | ||| | | | |||| | Sbjct 4031 TATGTTTTTAATAAACAATCGCTACCCCCTGATATGTGCTGCTTTCCTAA--TCAAAAGA 3974 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||| |||||||||||||||| ||| |||||||| | ||||| Sbjct 3973 T--------AGGAGAG-CACTCCTTCTCCCGAAGTTATTGGG-TATTTTGCCCAGTTCCT 3924 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || ||||| | | | || |||||| |||||| || ||||| ||| ||||| | Sbjct 3923 TCGACATAGTTCTCTCAAGTACCCTAGTATACTCTACTTGTTCACCTATGTAGGTTTGGG 3864 Query 246 GTA 248 ||| Sbjct 3863 GTA 3861 >seq662 Length=105940 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||| || ||||||| ||||| |||||||||| ||||||| | |||| | Sbjct 62647 GGCACCCCTTCGCCAGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 62588 Query 201 CGAACGCCTTAGTATTCTCTACCT 224 || | ||| ||||||||||||| Sbjct 62587 CGCGCCCCTAGGTATTCTCTACCT 62564 >seq21708 Length=4688 Score = 73.4 bits (80), Expect = 5e-11 Identities = 65/80 (81%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||| ||||| || |||||| | ||||| | ||| || |||| Sbjct 3241 CCTTCCAGCACTGGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3183 Query 66 TGTGTTTTTAGTAAACAGTC 85 ||||||||| |||||||||| Sbjct 3182 TGTGTTTTTGGTAAACAGTC 3163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692328945056