Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq2006 127 3e-27
seq1861 102 1e-19
seq492 102 1e-19
seq750 96.9 5e-18
seq10350 95.1 2e-17
seq662 75.2 2e-11
seq21708 73.4 5e-11
>seq2006
Length=59971
Score = 127 bits (140), Expect = 3e-27
Identities = 174/243 (72%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| || |||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 45378 CCTTCCGGCACTGGACAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 45320
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||| | || || || |||||||| ||
Sbjct 45319 TGTGTTTTTGGTAAACAGTCACCCCCGCCTGGTCACTGCGACCCCCT------------- 45273
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || ||| |||||||||||||||||||||||||| ||||||| || |||||
Sbjct 45272 TTGTG----AGGAGT--CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCCT 45219
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| |||||||||||| | |||||||||||||| |
Sbjct 45218 TAGAGAGAGTTGTCTCGCGCCCCTAGTTATTCTCTACCTACCTACCTGTGTCGGTTTCAG 45159
Query 246 GTA 248
|||
Sbjct 45158 GTA 45156
>seq1861
Length=62895
Score = 102 bits (112), Expect = 1e-19
Identities = 169/243 (70%), Gaps = 21/243 (9%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||| ||| || |||||||||| || |||||| | |||| | ||| || ||||
Sbjct 27387 CCTTCAGGCACTGGACAGGCGTCAGCCCTCATACATGGTCTTAT-GACTTTGCGGAGACC 27445
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||| | | || || |||||||| |
Sbjct 27446 TGTGTTTTTGGTAAACAGTCACC-CGGGCTTGTCACTGCGACCTTCT------------- 27491
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||| | ||||||||| ||||| |||||||||| |||||
Sbjct 27492 TTGTG----AGGAG--GCACCCCTTTTTCCGAAGTTATGGGGCTATTTTGCCGAGTTCCT 27545
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| | |||||||||||||| |
Sbjct 27546 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGTTTCGG 27605
Query 246 GTA 248
|||
Sbjct 27606 GTA 27608
>seq492
Length=121577
Score = 102 bits (112), Expect = 1e-19
Identities = 83/101 (82%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
|||||||||||||||||||||||||| ||| ||||| | |||||| || |||| | |
Sbjct 87858 GCACCCCTTCTCCCGAAGTTACGGGGTCATGTTGCCAAGTTCCTTCGACATGGTTCTCTC 87799
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| |||| |||||| |||||| || |||||||||||||||
Sbjct 87798 AAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 87758
>seq750
Length=101112
Score = 96.9 bits (106), Expect = 5e-18
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||||||||||||||||| || ||||||| || ||||||| | |||| |
Sbjct 68294 GGCACCCCTTCTCCCGAAGTTACGGAGCTATTTTGCTGAGTTCCTTAGAGAGAGTTATCT 68235
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||||||||| | ||||||||| |||| ||||
Sbjct 68234 CGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCAGTTTCGGGTA 68187
>seq10350
Length=14826
Score = 95.1 bits (104), Expect = 2e-17
Identities = 169/243 (70%), Gaps = 13/243 (5%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||| | ||||| | ||||||| | ||||| ||| ||| | ||
Sbjct 4090 CCTTCCAGCACCGGGCATGTGTCAGACTCTATACATTGTGTTACCA-CTTAGCAGAGTCC 4032
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
| |||||||| |||||| ||||| ||| || | | ||| | | | |||| |
Sbjct 4031 TATGTTTTTAATAAACAATCGCTACCCCCTGATATGTGCTGCTTTCCTAA--TCAAAAGA 3974
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||| |||||||||||||||| ||| |||||||| | |||||
Sbjct 3973 T--------AGGAGAG-CACTCCTTCTCCCGAAGTTATTGGG-TATTTTGCCCAGTTCCT 3924
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || ||||| | | | || |||||| |||||| || ||||| ||| ||||| |
Sbjct 3923 TCGACATAGTTCTCTCAAGTACCCTAGTATACTCTACTTGTTCACCTATGTAGGTTTGGG 3864
Query 246 GTA 248
|||
Sbjct 3863 GTA 3861
>seq662
Length=105940
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||||||| || ||||||| ||||| |||||||||| ||||||| | |||| |
Sbjct 62647 GGCACCCCTTCGCCAGAAGTTATGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 62588
Query 201 CGAACGCCTTAGTATTCTCTACCT 224
|| | ||| |||||||||||||
Sbjct 62587 CGCGCCCCTAGGTATTCTCTACCT 62564
>seq21708
Length=4688
Score = 73.4 bits (80), Expect = 5e-11
Identities = 65/80 (81%), Gaps = 1/80 (1%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||| ||||||| ||||| || |||||| | ||||| | ||| || ||||
Sbjct 3241 CCTTCCAGCACTGGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3183
Query 66 TGTGTTTTTAGTAAACAGTC 85
||||||||| ||||||||||
Sbjct 3182 TGTGTTTTTGGTAAACAGTC 3163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692328945056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |