Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq750 82.4 8e-14 seq492 82.4 8e-14 seq1861 75.2 1e-11 >seq750 Length=101112 Score = 82.4 bits (90), Expect = 8e-14 Identities = 120/166 (72%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 68193 AAACTGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGATAA-CTCTCTCTAAG 68251 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| ||||| | | | |||||||||||| || |||| ||| | || |||||| || Sbjct 68252 GAACTCAGCAAAATAGCTCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAATGG--GG 68309 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 |||| || ||| || | | |||||||| |||||||||||| || Sbjct 68310 TCGCAATGACCAGGCCCGGACGACTGTTTACCAAAAACACAGGTCT 68355 >seq492 Length=121577 Score = 82.4 bits (90), Expect = 8e-14 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 87757 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 87816 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| ||||| |||||| |||||||||||| || |||| Sbjct 87817 GAACTTGGCAACATGACCCCGTAACTTCGGGAGAAGGGGT 87856 >seq1861 Length=62895 Score = 75.2 bits (82), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83 |||| |||||| |||| ||| || |||| ||| || ||| || | | | |||| Sbjct 27602 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 27544 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| ||||||||| | || |||| ||| | || ||| | ||| Sbjct 27543 GAACTCGGCAAAATAGCCCCATAACTTCGGAAAAAGGGGTGCCTCCTCACAAA--GAAGG 27486 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 ||||| || || || || |||||||| |||||||||||| || Sbjct 27485 TCGCAGTGACAAGC-CCGGGTGACTGTTTACCAAAAACACAGGTCT 27441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529615690688