Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq750 82.4 8e-14
seq492 82.4 8e-14
seq1861 75.2 1e-11
>seq750
Length=101112
Score = 82.4 bits (90), Expect = 8e-14
Identities = 120/166 (72%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 68193 AAACTGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGATAA-CTCTCTCTAAG 68251
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| ||||| | | | |||||||||||| || |||| ||| | || |||||| ||
Sbjct 68252 GAACTCAGCAAAATAGCTCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAATGG--GG 68309
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|||| || ||| || | | |||||||| |||||||||||| ||
Sbjct 68310 TCGCAATGACCAGGCCCGGACGACTGTTTACCAAAAACACAGGTCT 68355
>seq492
Length=121577
Score = 82.4 bits (90), Expect = 8e-14
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 87757 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 87816
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| ||||| |||||| |||||||||||| || ||||
Sbjct 87817 GAACTTGGCAACATGACCCCGTAACTTCGGGAGAAGGGGT 87856
>seq1861
Length=62895
Score = 75.2 bits (82), Expect = 1e-11
Identities = 119/166 (72%), Gaps = 5/166 (3%)
Strand=Plus/Minus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGT-TAAG 83
|||| |||||| |||| ||| || |||| ||| || ||| || | | | ||||
Sbjct 27602 AAACCGACACAGGTAGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA-CTCTCTCTAAG 27544
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143
||||| |||||| | ||| ||||||||| | || |||| ||| | || ||| | |||
Sbjct 27543 GAACTCGGCAAAATAGCCCCATAACTTCGGAAAAAGGGGTGCCTCCTCACAAA--GAAGG 27486
Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
||||| || || || || |||||||| |||||||||||| ||
Sbjct 27485 TCGCAGTGACAAGC-CCGGGTGACTGTTTACCAAAAACACAGGTCT 27441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529615690688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |