Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2006 78.8 9e-13 seq28409 75.2 1e-11 >seq2006 Length=59971 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||| | | ||||||||| |||||||||| ||| ||||| || Sbjct 45277 GGTCGCAGTGACCAGGCGGGGGTGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 45336 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| ||||||||| || |||||||||||| || Sbjct 45337 AAGACCATGTATGGGGGCTGACGCCTGTCCAGTGCCGGAAGGTCAA 45382 >seq28409 Length=2808 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||| ||| |||||||||| ||| ||||| || Sbjct 2637 GGTCGCAGTGACCAGGCCCGGGCGACTGATTACCAAAAACACAGGTCTCCGCAAAGTCGT 2578 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||| ||| |||||||||||| |||||||| ||| || Sbjct 2577 AAGACCATATATGGGGGCTGACGCCTGCCCAGTGCCGGATGGTCAA 2532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475377939232